Portunus trituberculatus (swimming crab): 123507159
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Entry
123507159 CDS
T07853
Name
(RefSeq) exosome complex component RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123507159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123507159
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123507159
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123507159
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HWE_HK
Motif
Other DBs
NCBI-GeneID:
123507159
NCBI-ProteinID:
XP_045115744
LinkDB
All DBs
Position
21:17144721..17174964
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AA seq
337 aa
AA seq
DB search
MADISLSEAEKRYIVDGVKLGIRVDGRERLDYRQLEIETGLVSTANGSARVRLGCTDVLI
TVKMEMEPPPPQQPNDGQIHFFVNCSANAAPEFEGRGGEDLATSLSAMLDRLYSSPLSLD
TSRLCVVPGKHVKVLYVDVEILECGGNLFDTVSLGVKAALWATRMPRIYITGEDGGELEF
MVSDNPQEVDRVDVSNAPILITHLRITENLTVIDPTPEEECCGPVQVVVGVTPKGLITTT
QQLGAGTFAPQTLSASLKIRLSSLEAEVGRLQHRGRQLDHHLSRVLAQGSLLTSTIDDFH
LRLDALARSHKALTRAAQQNPKPSGYCVKNHGEVISD
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatcagcttgagtgaggcggagaagcgatacattgtggatggagtgaagctg
ggcattcgtgtggatgggcgggagcggctggactaccggcagctggagattgagacaggc
ctggtgtctactgccaatgggtcagcacgagtgcgcctcggctgtacagatgttctgatc
accgtcaagatggagatggaaccgccaccaccgcagcagcccaacgatggacagatacac
ttctttgtcaactgctcagccaatgcggccccagagtttgaaggtcgaggtggagaggac
ttggctaccagcctgagtgcaatgctggaccgcctctactcctcccctctgtcccttgac
acaagcaggctgtgtgtggtgcctggcaagcatgtcaaggtgctctatgtggatgtggag
attctagaatgtggtgggaacttgtttgacacagtgagcctgggagtgaaggcagcactg
tgggccaccaggatgcctagaatatacatcactggtgaggatggaggagagctggagttc
atggtgtcagacaaccctcaagaagttgacagagtggatgtgtccaatgctccaatcctc
atcacacacttgaggataacagaaaacttgacagtgattgacccaacccctgaggaagag
tgctgtgggcctgtgcaggtggtggttggtgtcactcccaagggcctcatcaccaccaca
cagcagttgggagctgggactttcgcaccgcagactctttcagcttctctcaaaattcgg
ctcagtagtctagaggctgaggtgggacgcctgcaacaccggggccgccagctggaccac
catctgtcgagagtcttggcacaggggtcgctgctcacttccaccattgatgacttccac
ctgagactcgatgccttggcgaggtctcacaaggcgttgactcgtgcggcgcaacagaat
cccaaaccttctggatactgtgtgaaaaaccatggagaggtgatcagtgactga
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