Portunus trituberculatus (swimming crab): 123508116
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Entry
123508116 CDS
T07853
Name
(RefSeq) endoribonuclease Dcr-1-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ptru
Portunus trituberculatus (swimming crab)
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptru03036
]
123508116
Chromosome and associated proteins [BR:
ptru03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123508116
microRNA pathway
RISC loading complex
123508116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
dsrm
Motif
Other DBs
NCBI-GeneID:
123508116
NCBI-ProteinID:
XP_045117537
LinkDB
All DBs
Position
24:19202585..19227124
Genome browser
AA seq
2545 aa
AA seq
DB search
MRRKRKMNRVQPENVHSTIFTQREYQVELVDACLRENTMTVLASRSTRTFLITMVTREMA
HLTRSGRQRTLITGWSGPGLVRVGEAIQQNTNLAVTTYTALDQVDNWPASRWGQSFREAQ
VLIMTIEVLERGMMADVLPLDMLNLLVITDAHRMATCPTVHKILSSCGGCRILGMTSPVL
SHACSPPQLESFLNHIQQASSCRVDTASEIVTVLRYVNKPLEKIVMCRDPSQEERSEVEI
EVRQLVDQAMNFLGEHRYDLVEVYGPEYQEFCDGLPDPNTEPRQILLDFLDVLNNLGLWC
ADRAALYALVEVEKLKKKTAYDRHYLLLCMIFTVMARIRAVVEQAFDKYSELDQILKFST
PKVLRLVEVLRQVRPLNFVDPRKRRDKTENTESLKGVTQVEGSETLAIEATADPEHSEVS
VVLSITEGAASPEDSHTDCKEQDDNEEKEKKTPEDSLCLSGSSQIGKEEEVSTAKNCVND
AEQISHEGSEIGTKSDIEMLDQIVHKTVNKESLCNGCAFEEDSCLPNIMDLASPSKPSSK
QSKKCANTEAPKAVSECQANGWSSQDVSLDMCDCSGKSEKGVNSKEKSVNCQHSVAGECL
HNGEVEEECQEPSKVQIHPDVTQNCCNISESVVTKKAGDGSTLEEDLCRLSLRESSFRTG
CELENPINCDVSNGTTSAKSHLHDAAKVHNSISAPLCNGYQSGSEESLPSLRTSEGCPDN
KLSNHNNQKESVSSVQGEKEYCLEQTHSVQSNLCDEEVQPDERVPFTSAHSTTSQPASKV
ADVPATLSEVTTAHSEAAEDTRGHTEATRVATHHKEANEATTDHNEASEATTDPNDASEA
TTDPNDASEATTDPNDASEATTDPNDASEATTDPNEASEATTDPTESCEAPKDTSKDNEA
TTSPAEVNESTGSPTEANEAKPQTATSTSGEPSKDADNTVSPAPAVSSEAAAMADTLALL
LPGGGGGKGGRKRRDEVKEKVKVHNPDDPDSVCGLIFVHHRNIAKIIYRLLKELSDIGGD
FAWIFPQYTVEARENVKDDPRAAEAEHKKQEEVLRRFRHHECNVLVSTRVLEEGIDVPQC
NLVLRFDPPLDYRSYVHSCGRARGQDTFYFHLVTKAQEKAFLRDMATYSAFQKVLVSRCS
SVEVGTDQEVDAEEANAAYAPYLTPANASVTMASSISLLNKYCAKLPSDTFTRLTAMWAM
DERQEEDLVLYSCRIMLPINSPLKGTIKGPWQPKVSLAKMAAALECCRRLHEVGELDDHL
QPVGKESMRLDDHLCPPPPDDQVPEGMPRPGTTKRRQYYYKKVANCLTGEQPKEELPLFV
YKLGMVLTCPIPDEQNTRGRKIYRPEKSSRSFGIVTTKPIPQVSGFPVFTRSGEVMVQVE
EVGTRENFTQDQLAALQYFHKFSFTHVLRLEKYPIKFDPTNAKTAFYIVPLNKSEDTDSI
DWEFVRKIQAEGDPRPVPPLEEARQKFHFQHSLYEDAVVMPWYRNQDQPQYFYVAEICTH
LNPQSDFPDAGFETFEKYYLTKYGLQICNLSQPLLDVDHTSGRLNLLTPRHVNRKGVALP
TTSEETKRAKRENLQQKQILVPELCTIHPFPASLWRKAVCLPTILYRINALLLADQLRIC
VAQEVGLGLQTLDPGFSWPPLDFGWSLADVLKKSQSNQETPEVDPKTKDTNTTSQKTSKK
TEPVESVESPSPKKKPARSGSDMEIGTWSNDMAVDPPSPPFTEDDLNGSDEFEIDTFDPN
VALPDNLTLLDGCTGGDDEVEGELGADWGTGLTERRTKGSSSKSSAGGGEIFRVGSPSNF
EIDGWDMFGGSGGTGYGGNYGGYGSYDAYGGYGDFEGLADDLEGCESDVSSDMDDDDKSQ
ADKLWEEEATKRRANTAIDDASSDEEVDLWWPQEEKEVCLAKEEEFQQLLEEKQQDLLLG
PTYLSESTPLVVEKAHRRLAVEQNATASIEKESVTVGKATIQGCEMLSSKCCDNAQQSTS
PKTAIVNRTETLSLTEFDKGAEVPPWRNSPDELSFSFDYQPDLLHHPGPPPSVILQALTM
SNANDGVNLERLETIGDSFLKYAITTFLYCTYPLRHEGKLSYLRSKQVSNLNLYRLGKRK
GLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGVPAGHWNMADLPGLHDLASDEIRR
LVQERSEQIKRSKSEQVTSDLMATQNPHDLPIFIPYNLLTQHSIPDKSIADCVEALIGAY
LTTCGPRGALLFMSWLGIKVLPCKYQEQEDSAISAPQITYGHLEPPQSPLHQCPISATDL
QLDLLLSGYMVFEEKIGYTFRDRSYLLQAFTHASYYRNRLTDCYQRLEFLGDAVLDYLIT
RHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDFHKYFRHFSPGLDRVVRDFVKMQE
ENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGGSLDAVWSVYYTMM
CREIEQFSGVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYR
IAKSTAAKRALRHLKKLQMMANQGM
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtaaacgcaagatgaaccgggtacagccggagaatgtgcactccaccatcttc
acccagcgggagtaccaggtggagctggtggacgcctgcctgcgggagaacaccatgacc
gtcctggcctcccgctccacccgcaccttcctcatcacaatggtcacgcgggaaatggcg
cacctcacacgcagtgggaggcagcgcacactcatcactggctggtctgggccggggctg
gtgcgggtaggggaggccatccagcaaaacacaaacctcgccgtcaccacctacaccgcc
ctggaccaggtggacaactggccagcctctcggtggggccagtccttcagggaggctcag
gtgctgatcatgaccattgaggtgctggagcgtggcatgatggctgacgtcctcccattg
gacatgctcaatcttctggtcattactgacgcccaccgcatggccacctgtcccacagta
cataagatcctgagcagctgtggtggatgtcgtattctgggcatgacgtccccggtgctg
agccatgcctgctcacctccccagcttgagtccttccttaaccatatccagcaagcttca
tcttgcagggtggacactgcttccgagattgtcactgtcctgcgatatgtaaataagcct
ttggaaaagatagtgatgtgtcgggacccaagccaagaagagcggtctgaggtagagata
gaggtgcgtcagctagtggatcaggctatgaacttcctgggggagcaccgctatgacctg
gtggaggtgtatggaccagagtaccaggagttctgtgatggcctgcctgatcccaacact
gagccccgacagatactccttgactttctggatgtgctcaataatttagggctgtggtgt
gctgacagagcagctttgtatgcattagttgaagtggagaagttgaagaagaagactgcc
tatgatcgtcactacctcctgctgtgtatgatcttcactgtcatggctcgtataagggct
gtagtggaacaagcattcgataaatattcagaattggaccaaatcttgaagttttccacc
cccaaagttttgcgcttagttgaagtcctccgtcaggttcgtcctctaaactttgtagac
cctcgtaagagaagagacaagacagaaaacaccgagagcttgaagggagtaactcaagta
gaaggatcagagactcttgctattgaggccacagctgaccctgaacactctgaagtgtct
gtggtgctgtctataactgagggagctgcatctccagaagattcccacacagattgcaaa
gaacaagatgataatgaggagaaagaaaagaaaacacctgaagactcactctgcctctca
ggttcctctcagattggcaaggaggaggaggtctccactgcaaagaattgtgtgaatgat
gcagaacaaatcagtcatgaaggaagtgagattggcactaaatctgatattgaaatgtta
gaccaaatagttcataaaactgttaataaggagagtttgtgcaatggttgtgcttttgag
gaggattcctgtctccctaacattatggacctggcctcccctagcaagccctccagcaag
cagtcaaagaaatgtgcaaatacagaagcaccaaaggctgtgtcagaatgtcaggccaat
ggatggagttctcaggatgtcagtctggatatgtgtgactgttcaggaaagagtgaaaag
ggagtgaattctaaggaaaaaagtgtcaactgtcaacatagtgtggcaggagagtgtctc
cacaacggagaggtggaggaggagtgtcaagagccaagcaaagtacaaattcatccagat
gttacacaaaactgttgcaatatctctgaatctgtagtcactaagaaagctggagatgga
tcaactttagaagaggatttatgtaggcttagtcttagggaatcctcatttagaactggc
tgtgaacttgaaaatcctataaactgtgatgtaagcaatggaactacgagtgccaaaagc
cacctgcatgatgctgccaaggtacacaatagtataagtgctcctctatgcaatggatac
cagagtggcagtgaagagagcttgccatccttgagaacctctgaagggtgtcctgacaat
aagcttagcaaccacaacaaccaaaaggagtcagtatcctccgttcagggcgagaaggag
tactgcctggagcagacacattcagtacaaagcaatctgtgtgatgaggaagtccagccc
gacgaaagagttcccttcaccagtgctcattccactacctctcaaccagccagtaaagtg
gctgacgtcccagcaactctttccgaggtcaccactgcccacagtgaggctgctgaggat
acaagaggtcacactgaggctacaagagtcgccacacaccataaggaggcaaatgaagcc
accacagaccataatgaggccagtgaagccaccacagaccctaatgatgccagtgaagcc
accacagaccctaatgatgccagtgaagccaccacagaccctaatgatgccagtgaagcc
accacagaccctaatgatgccagtgaagccaccacagaccctaatgaggccagtgaagcc
accacagatcctactgagtcctgtgaagctcctaaagacacttctaaagataatgaagcc
accacaagccctgctgaagttaatgaatccactggaagccctactgaggccaatgaagcc
aagccacagactgccacaagtacttcgggtgagcccagcaaagatgcagacaacactgtg
tctccggcgccggccgtgtcatctgaggccgcagccatggcagacaccctggccctgctg
ctccctgggggcggcggaggcaagggtggcaggaagcggcgtgatgaggtcaaggagaag
gtcaaggtgcacaacccggatgaccctgactcagtgtgtggcctcatctttgtgcatcac
cggaacattgccaagatcatctaccgcctcctcaaggagctgagtgacattggaggagac
tttgcctggatcttcccccagtacacagtggaggctcgggagaatgtgaaggatgaccct
cgtgcggctgaggctgagcacaagaagcaggaggaggtgttgagaaggttccgtcatcac
gagtgcaatgttctggtgtccacacgggtgctggaggaagggattgatgtgccacagtgc
aacttggtcctgcgatttgaccctcctctggactatcgttcatatgtgcacagctgtggt
cgtgccagaggccaagacactttctatttccacctggtaaccaaagctcaggagaaggct
ttcctgcgagacatggctacgtactcagctttccaaaaggtattggtgagtcgctgcagc
agcgtggaggtgggcacagaccaggaggtggatgcagaggaagccaatgcagcgtatgca
ccttacctgacccctgccaatgcctcggtcaccatggcctcctccatcagtcttctcaac
aagtattgtgccaagctgccgagtgacaccttcacacgcctcactgccatgtgggcgatg
gatgagaggcaagaggaggaccttgtgctgtacagctgtaggatcatgctgcccatcaac
tcccctctgaagggcaccatcaagggtccgtggcagcccaaggtttcgctggccaagatg
gcggcggcgttggagtgctgtcggcggctgcatgaagtgggtgagctggatgaccattta
cagccagtgggcaaggagagcatgcgtctggatgaccacctttgccccccaccccctgat
gaccaggtgccagagggaatgccccgccccggcactaccaagcgccgacagtactactac
aaaaaggttgccaactgcctgaccggggagcagcccaaggaggagctgccactgtttgtg
tacaagctgggcatggtgctcacctgccccatccctgacgaacaaaacactcggggccgt
aagatttatcgccctgaaaagtcatcgcgttcttttgggattgtgaccactaagcccatt
cctcaggtgagtgggtttccagtcttcacacgatctggagaggtgatggtgcaggtggag
gaggtaggcactagagaaaacttcacccaggaccagctagcagccctgcagtacttccac
aagttctcctttactcatgttctgcgattggagaaatatcccatcaaatttgacccaact
aatgccaagacagcattctatatcgtgccactcaacaaatctgaggacacagatagcatt
gattgggaatttgtgaggaagatccaggcggagggtgatccaaggcctgtaccgcccctg
gaggaggctcgccagaagtttcatttccagcacagcttgtacgaggatgctgtggtgatg
ccgtggtacaggaaccaggaccagcctcagtacttctatgtggctgagatctgcactcac
cttaacccacaaagcgactttcctgatgctggatttgagacctttgagaagtattacctc
accaagtatggcttgcagatctgcaatctgagtcagccattattggatgttgaccacacc
tcaggtcgcctcaacttgctcaccccaagacatgttaacaggaaaggagttgctctgcca
actacctcagaggaaaccaagagagccaaacgggaaaatttacaacagaagcagatcctg
gtacctgaactgtgcaccattcacccattcccagcctccctgtggcgtaaggctgtgtgc
ctgcccaccattctgtaccgcatcaatgctcttctcttggcagaccagctcaggatctgt
gtggctcaagaagttggtctgggtctgcagacacttgatcctggcttttcatggccaccc
ttggattttggttggagcttggctgatgtgctgaagaaaagccaaagcaaccaggaaaca
cctgaagtagacccaaagaccaaggacaccaacactacttcacagaagacatccaagaaa
acagagccagttgaatcagtagagtccccgtctcccaagaagaagccagcccgcagcggc
tctgacatggagataggcacgtggtccaacgacatggcagtggatcctccatctccaccc
ttcactgaagatgaccttaatggatctgatgagtttgagattgataccttcgatcctaat
gttgctctgccagacaacctgacactgttggatggctgcactgggggagatgatgaagta
gagggagagcttggggctgactggggcactggcctgacagaacgccgcaccaaaggttcc
tcctccaagagcagtgccgggggaggagaaatcttccgcgtcggttcaccttccaacttt
gagattgatggatgggatatgtttggaggctcaggagggacaggctatgggggcaattat
ggtggatatggatcctatgatgcctatggtggctatggtgactttgagggtttggcagat
gacctggaaggctgcgaatctgacgtttcctcggacatggatgatgatgacaagagccag
gctgacaagctgtgggaagaggaggccaccaagcgacgggccaatacggccatagatgat
gcttcatctgatgaggaggtggatctgtggtggccccaggaagaaaaagaggtgtgtctg
gccaaagaggaggagtttcagcaattactggaagaaaagcagcaggacttgttgctagga
cctacctatctttctgaaagtacccctttggtggtggagaaggcacaccgaaggctggct
gtagaacaaaacgctactgcatctatagagaaggagagtgtaactgtgggaaaagctaca
atacaaggctgtgaaatgctatcttcaaagtgctgtgataatgctcaacaatctacctca
cctaaaactgcgattgtgaaccgcactgaaacactctctctcacagagtttgacaaaggt
gctgaggttcctccgtggaggaactcccctgacgagttatcctttagctttgactaccag
ccagacctcttgcatcacccaggaccaccgcccagtgttatcctccaggcactcaccatg
tccaatgctaacgacggcgttaatctggagcgtctggagaccattggagactccttcctc
aagtatgccatcactactttcctgtactgcacttatcctcttcgtcacgaaggcaagctg
agctacctgcgctccaagcaggtcagcaacttgaacctttaccgccttgggaaacgcaag
ggtttaggagaatgcatggtggccacaaagtttgagccacatgacaactggctgcctcct
ggctactttgttccccgagagctggaggaagcactgattgactccggcgttcctgcaggc
cactggaacatggcagatctgccgggactgcatgacctggccagtgatgagatccgccgg
ttggtgcaggagcgctctgagcagataaagcgcagcaagtcagaacaggtgaccagtgac
ttgatggctacacaaaaccctcatgacctgcccatttttatcccctacaatttactaact
caacacagcatcccggacaagagtattgctgattgtgttgaggctttgattggggcatac
ctcaccacttgtgggcctcgtggtgctctgcttttcatgtcttggctcggcataaaagtg
ttgccttgcaagtaccaggagcaagaagattctgccatctcagcacctcagatcacctac
ggtcaccttgagcctccacagtcacctctccaccagtgccccatctctgccacagacctg
cagctggatcttctcctcagtggctacatggtgtttgaggaaaagattggctatactttc
cgagaccggtcctacttgcttcaggctttcactcatgcctcttactacaggaaccgcctc
actgactgttaccagcgcctggaattccttggagatgctgtgttagattatctgataacc
cgccacttgtatgaggacaagaggcagcactctcctggggccttgactgacctgagatct
gcgctggttaacaacaccatctttgcctcgcttgctgtcaagtatgacttccataagtac
ttcagacacttttctcctggtctggaccgtgttgtgagggactttgtcaagatgcaggaa
gaaaatggtcacaagatcaatgaggagtactacttcatggaggaagatgagtgtgaggca
gcagaagacattgaggtgccaaaagctcttggagatgtgtttgaaagtgtggctggggcc
atctttcttgactctgggggctccctggatgctgtgtggtcagtctactataccatgatg
tgccgggagatagagcagtttagcggcgtggttcccaagtcgcccatcagagaactgttg
gaaatggagcccgagacggccaagtttggaaagccagagcgcctggtggatggtaaggta
agagtgtctgtggagatttttgggaaggggtcgttctcaggtgtgggacgcaactaccgc
attgccaagtctacggcggccaagcgtgctctgcgccacctcaagaagctgcagatgatg
gccaaccaaggcatgtga
DBGET
integrated database retrieval system
