Portunus trituberculatus (swimming crab): 123509212
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Entry
123509212 CDS
T07853
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03013
Nucleocytoplasmic transport
ptru03015
mRNA surveillance pathway
ptru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123509212
09122 Translation
03013 Nucleocytoplasmic transport
123509212
03015 mRNA surveillance pathway
123509212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123509212
03041 Spliceosome [BR:
ptru03041
]
123509212
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123509212
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123509212
Spliceosome [BR:
ptru03041
]
Complex C
Other components
EJC/TREX
123509212
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123509212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123509212
NCBI-ProteinID:
XP_045119344
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All DBs
Position
26:complement(2796460..2812983)
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AA seq
461 aa
AA seq
DB search
MAALQVVQEHSANVEGMIVSPAATRINKHPELDNMADPEPELLDYEEDEEAVDGGVAETQ
EAAPPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL
GQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMCHTRELAYQIAKEYERFSKYMPTVKVG
VFFGGMNIQKDEDTLKNNCPHIVVGTPGRVLALVRNKKLSLRHLKHFVLDECDKMLEQLD
MRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHY
VKIKENEKNKKLFELLDALEFNQVVIFVKSVQRCVALATLLVDMNFPAIAIHRAMQQEER
LSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL
AVTFVSEESDAKTLNEVQERFDVNITELPDEIDLSSYIEGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttacaggtggtacaggaacactcagcgaacgtggagggcatgattgtgtct
cccgccgctacgagaatcaacaaacaccctgaactagacaacatggccgacccagagcca
gaacttctcgactacgaagaggatgaggaggcggtggacgggggtgtggcagagacccag
gaggcagccccccctaagaaggatgtgaagggaacatatgtgtctatccattcctcagga
ttcagagatttccttctcaagccggagattttaagggccattgtcgattgtggctttgaa
catccgtcagaagtgcaacacgaatgcatcccacaagcagtgttggggatggacattctg
ggccaggctaagtccggcatgggcaagacggctgtgtttgtcctggcaacactgcagcag
attgaccctgtggatggccaggtgtcggtgttggtgatgtgccacacccgcgagttggcg
taccagatcgcgaaggagtatgaacgttttagcaagtacatgccgacggtgaaggtggga
gtgttcttcggggggatgaacatacagaaggacgaggacacccttaagaacaactgccct
catatcgtggtggggacgccggggagggtgctggctctggtgcgcaacaagaagctcagt
ctgcgccacctgaagcatttcgtgctggacgagtgcgacaaaatgctcgaacaactggac
atgaggagggatgtgcaagagattttccgcaacacaccacacgagaaacaagttatgatg
ttttcagccacactcagcaaggacattcgccccgtctgcaagaaattcatgcaagatccc
atggaggtgtatgtggatgacgaggcaaagctgaccctgcacggcctccagcaacactac
gtcaagatcaaggagaatgagaagaacaagaagctgtttgaactcctcgatgctttggag
tttaaccaggtggtgatctttgtgaagtcagtgcagcggtgtgtggcgctggcaacactg
ctggtcgacatgaacttcccagccatcgccattcaccgcgccatgcaacaggaggagcgt
ctcagccggtaccagcagttcaaggacttccagaagcgcatcttggtggcaacgaacctg
tttggccgaggaatggacattgagagggtgaacattgtcttcaactacgacatgcctgag
gacagtgacacctacctgcatcgcgtggcccgggctggacgcttcggtaccaagggcctg
gcggtgaccttcgtgagcgaggagagcgacgccaagacactgaacgaggtgcaggaacgc
ttcgacgtcaacattactgagctgcccgacgagatcgacctctcgtcctacattgaggga
cgctag
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