Portunus trituberculatus (swimming crab): 123510958
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Entry
123510958 CDS
T07853
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123510958
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptru00536
]
123510958
Glycosaminoglycan binding proteins [BR:
ptru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123510958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Mucin
New_glue
Motif
Other DBs
NCBI-GeneID:
123510958
NCBI-ProteinID:
XP_045122428
LinkDB
All DBs
Position
30:8185427..8211791
Genome browser
AA seq
1563 aa
AA seq
DB search
MGWLPAPTRRPPPLPSSLSLLLGFLFLVAVVLPSVTAEPEPDPKPQQEDYYDYDEYDGDY
NYGEYNYGYDEYDPEDPAPYDPYTTSPPYRAAYDPYDVETPVTDPPSRPPPPPPPTTTTT
TTTTTTRPPPPPTTTTSTTTTSTTTTTPPPPRPRRVEVSYERRVSSERRGGRRGGSGERG
QAAGRGEEEEPPPDLVRPTSPESGYGVSTTGVQGPEGPQGEQGQAGSPGNPGIPGDPGPP
GPMPDITPWLAQLSQSQGGEKGPGGGIGPGTFSYLQSQVGPVGPRGSPGSAGPPGPQGFQ
GMRGEPGDPGSIGSSGPPGPRGMPGIPGKDGDNGDDGAPGPPGAVGPPGPRGLPGMPGLP
GVKGHRGFPGIDGAKGEQGKSGNKGSSGPGGPPGPIGPMGSAGPRGERGREGPPGPPGLR
GIDGIAGPPGPSGPPGKSGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGTPGER
GPQGASGKDGLIGDKGAPGSQGDSGPPGFPGARGPPGLSGSPGPPGSKGERGLGGVRGFK
GESGMKGESGTPGPRGLPGPPGSSGKRGKRGMRGSPGGMGLQGERGPTGGRGLPGADGPP
GPKGQSGDPGPPGSSGQKGREGNPGPPGLPGRQGLRGPTGLSGPPGKTGRSGSRGPPGAD
GKPGDQGPQGIQGLPGPMGPPGPMGQMGESGKDGNPGESGPPGPRGDPGKDGDQGSLGPP
GPTGSPGERGPPGSPGARGFQGLPGAPGLAGSSGKDGEAGMQGPRGLPGSVGPRGNRGFP
GERGSSGSPGESGKRGEPGQSGPDGPPGPPGPAGQKGHSGPSGLVGLPGGRGPPGMPGEK
GERGSFGPVGSEGPPGRQGDQGPQGIMGPVGPPGEPADKGDPGPPGPPGEPGANGLTGER
GTQGEQGLQGFPGPLGPPGILGPKGQRGLPGQKGSQGNPGSMGPPGEQGPQGLVGLRGTK
GQRGESGKRGDAGLMGPPGRPGNSGAPGSPGDQGRPGTAGIPGIKGSPGDTGRPGLPGPA
GQPGAPGPEGSKGEAGPDGRPGPVGQPGPVGSAGERGLPGLPGPPGPAGRQGKRGDRGET
GPEGKRGDEGPIGPPGLAGPIGPIGIPGETGVPGADGKPGPPGIAGRTGDKGPQGSPGPQ
GGPGPTGLPGPPGSSGPIGPTGERGERGEIGPQGVEGPRGPRGKPGAPGSQGEKGETGNS
GPKGSKGHPGLVGLQGLPGAQGGRGDKGLPGMAGPPGPAGEPGPKGPPGRDGGIGLQGVM
GPPGPRGPSGESGNSGQPGPPGPVGPPGPPGESMGYGVEVLAAFLGQGQTKGPDPLQGDD
SELPARLFGQEITDDERRDLITKAYEQLKASYKKFLRPEGTKESPAKTCRDLSYTHPDLP
SGEYWVDPNEGDVKDALVVHCDMEQKATCVLTQPSMTQEYNWVGRTSGITWLGEDIEPGF
EFTYKADSNQMRFLQLLSSEAWQQLTYHCKNSVAVFDATRKNLRSAIQVMTAADTELKAR
GNRKFRYRVIEDGCRTKSSTWSSTKIEYRTNKPQRLPFLDVGLRDVGKADQAFKIELSHV
CFS
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atggggtggctcccagcccccacccggcggcctcccccgctcccctcatccctctccctc
ctcctaggtttcctcttcttggtggctgttgtcttgcctagcgtgacagcagagcccgaa
cctgatcccaaaccccagcaggaagattactacgactatgatgaatatgatggagactac
aattacggcgagtacaattacggctacgatgaatatgacccagaggatcctgctccttat
gacccctacaccacctcccctccctaccgagccgcatatgacccttatgacgtagagacc
ccagtcactgatcccccttcccgtccccctccccctccccctcccaccaccactaccact
accaccaccaccactacccgtcctcctcccccccccactaccaccacttccaccaccacc
acctccaccactaccacaaccccccctcccccaagacctcgccgagtggaagtgagttat
gagagaagagtgtcctcggagcgaagaggcggaaggagaggaggtagcggtgaaagagga
caagctgccgggcggggagaggaagaggagcctcccccagatttggtccggcctacctcc
cccgagtctggctacggcgtctccaccacaggggttcaaggtcctgagggaccccaaggt
gaacagggccaggcagggtctccaggaaacccaggaatccccggtgatcctggaccaccc
ggacccatgcctgacatcacaccatggctggctcagctctctcagtcccagggcggcgaa
aagggtcccggaggaggtatcggccctggtacattcagctacttgcagtcgcaggtcggc
cccgtcggtcccagaggaagcccaggttctgcaggtccccccggtccccaaggattccag
ggtatgcgtggtgagcctggtgatccaggttccattggctcctctggacccccaggaccc
cggggtatgcctggcattcccggcaaggacggcgacaatggcgatgatggagctcctggc
ccccctggtgctgtggggccccccggtcctcgcggccttcccggcatgccaggtctgccc
ggcgtgaagggccaccgcggcttcccgggtatagatggagctaagggagaacaaggaaaa
tctggaaacaagggctccagcggaccgggcggtcccccaggtcccattggtcccatgggt
tcggctggtcctcggggtgagcgagggcgcgagggacctcctggtcctcctggtctgagg
ggtattgacggaattgcaggtcctccaggaccaagtggtcctccaggaaaatctggacca
cctggcttccctggtagtgctggagctaagggcgaccagggcgtgcaaggccccaaggga
tcccagggtcttcagggaccacgaggagaggctggcaaaccaggcactccaggcgagcgc
ggtccccagggcgcttctggtaaggatggtctcattggtgataaaggcgcaccaggatcc
caaggtgactctggccctcctggcttccctggagctcgtggtccccccggactctctggc
agtcctggcccacctggcagcaaaggagaacggggcctaggaggagtgcgaggtttcaag
ggagagtctggcatgaagggagagtctggtacaccgggtcctaggggtctccctggaccg
ccaggatcttcaggaaaacgagggaagagaggtatgcgaggatcccctggtggaatgggt
ctgcagggagaacgaggacccaccggtggtcgaggccttcctggtgctgatggacctcct
ggacctaagggtcagagtggagatccaggtcccccaggcagctctgggcagaaaggtcgt
gaaggaaaccctggaccaccgggtcttccaggccgacagggacttagaggtccaactggt
ctctctggtcctccaggaaagacaggtagatcagggtctaggggaccacctggagctgat
ggcaaacctggtgatcagggaccgcagggcattcaaggtctaccaggacctatggggcca
ccaggacctatgggacaaatgggtgaatcgggtaaggatggtaaccctggtgagtcaggc
cctcctggaccacgtggtgacccaggaaaggatggtgaccaaggctcccttggtccaccc
ggccctacaggaagtccaggagagaggggaccacccggatcccctggtgctcgtggcttc
cagggtcttcctggtgcaccaggtcttgctggatcgagtggcaaggatggagaagctggc
atgcagggtccacggggtcttcctggcagtgtgggtcctcgtggtaatagaggcttccca
ggagagcgtggatccagtggttccccaggagaatctggcaagcgtggggaaccaggacaa
tcagggcctgatggccccccaggtcctcctggccctgcaggacagaagggacattctgga
ccctccggcctcgtaggtctgcctggaggtcgtggtccccctggtatgccgggagaaaaa
ggtgagcgtggctcttttggtcccgttggtagcgaaggtcccccaggccgtcagggtgac
caaggtcctcaaggaataatgggaccagttggacctcctggagagccagcagataaggga
gacccaggtcctcctggtcctcctggtgaacctggtgccaacggcttaacaggagaacgt
ggaactcagggagaacagggtctgcaaggctttccgggaccacttggacctccaggaatt
ttaggaccaaaaggacagcgaggccttccaggacagaagggctcccaaggtaatcctggc
tccatggggcctcctggagaacagggacctcaaggtctggtgggtctgaggggcaccaag
ggacagcgaggcgagtcggggaagcgcggtgatgcaggtctgatgggtcctcctggacgt
cctggtaactcaggcgcacctggttctccaggagaccaaggtcgtcccggcacagcaggc
atccccggcatcaagggatctcctggtgacacaggccgaccaggcttgcctggaccagct
gggcagcctggagcccctggaccagaaggttccaaaggggaggctggtccagatggtcgt
cctggtcctgttggccaaccaggtcccgttggctcagcaggagagcgaggtctacctggg
ctccctggcccacctggtcctgctggtcgtcaaggaaaacgaggtgatcgcggagaaact
ggccctgagggtaagagaggtgatgagggtcccattggcccacctggtcttgctggtcca
attggccctatcggtattcctggtgaaactggtgttcctggtgctgatggcaaacctgga
cctcccggtattgctggccgcacaggagacaagggtccccagggatcccctggtccacag
ggtggccctggtccaactggtctgcctggtcctcccgggtcatcaggacccattggtcct
actggagaacgtggagagcgaggagaaattggtccccagggtgtggagggccctcgtggt
cccagaggaaagccaggagctcctgggtctcagggtgaaaagggagaaacgggcaacagt
ggacctaagggaagcaagggccatcctggtctcgttggtctgcaaggtcttcctggagct
caaggtggtaggggcgataaaggtctcccaggcatggcaggtcctcctggtcctgcaggt
gagcctggtcctaaaggtccccctggccgtgatggaggaattggacttcagggtgtcatg
ggtcctccaggccctcgtggtccttctggtgagagtggcaactctggtcaaccaggccca
cctggtcccgttggtcctcctggtcctcctggagagtccatgggctatggtgtggaggtg
ttggcagcttttctgggccagggtcaaaccaagggccctgatcctctacagggagatgac
tctgagttacctgcacgactctttggccaagaaattacagacgatgagaggcgtgacctc
atcaccaaggcttatgaacagctcaaggcgtcgtataagaagttcctaagaccagagggt
accaaggagtccccagcgaagacctgccgtgacctgtcatacacccatcccgacctgccc
agcggtgagtactgggtagatcctaatgaaggcgacgtaaaggacgccctcgtggtgcac
tgtgacatggagcagaaggccacgtgtgtcctaactcagcccagcatgacgcaggaatac
aactgggtgggaagaacctctggcatcacctggctgggtgaggacatcgaacctggattt
gagtttacatacaaggcggacagcaaccaaatgcgcttcctgcagcttctctcttccgag
gcatggcagcagttgacataccactgcaagaactccgtggctgtcttcgatgctactagg
aagaatttacgtagtgcaatacaagtcatgaccgcggcagacacggagctgaaggctaga
ggcaacaggaagtttagatatcgagtgatagaagatggttgcaggacgaagtccagcact
tggtccagcacgaagatagagtaccgcacgaacaaaccgcagcggttacccttcctggac
gtgggtctccgcgatgtagggaaagctgaccaagcattcaagatcgaactgagccacgtt
tgtttctcgtag
DBGET
integrated database retrieval system
