KEGG   Portunus trituberculatus (swimming crab): 123511273
Entry
123511273         CDS       T07853                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
ptru  Portunus trituberculatus (swimming crab)
Pathway
ptru03013  Nucleocytoplasmic transport
ptru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123511273
  09122 Translation
   03013 Nucleocytoplasmic transport
    123511273
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptru03019]
    123511273
   03041 Spliceosome [BR:ptru03041]
    123511273
Messenger RNA biogenesis [BR:ptru03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     123511273
Spliceosome [BR:ptru03041]
 Complex C
  Other components
   EJC/TREX
    123511273
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123511273
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st eIF2A Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st RMC1_N Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N NBCH_WD40 Beta-prop_WDR75_1st Tricorn_2nd Beta-prop_EIPR1 Beta-prop_HPS5 PROPPIN Beta-prop_TEP1_C PD40 Beta-prop_WDR11_1st Peptidase_S9_N WD40_RFWD3 Cytochrom_D1 KNTC1_N Beta-prop_NUP159_NUP214 Beta-prop_ELP1_1st Beta-prop_SCAP DPPIV_N WD_LRWD1
Other DBs
NCBI-GeneID: 123511273
NCBI-ProteinID: XP_045122958
LinkDB
Position
4:complement(5517008..5534317)
AA seq 395 aa
MAFPPSTVNASTGITGTGTGTCPPHDAGAVATRQSHSRLARTVGGQDEREEGRERRVTSA
WLTLQQCAAMGLSYLEEMRTYFESHNKQKEYVGHNSKVHTIGWNADGRRLASGSYDKCVT
IFVFDGHRETLRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVRIWDTRTHKCSATI
NTKGENINITWSPDGQTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEVNELSWNNTNDLFY
LTNAQSGQGYIHIYNYPEMELVHSIHAHPGNCICIKFEPQGRYFATGSADALVSIWDVQE
LYCKRTLPRLEWPVRTLSFSSDGQLLASGSEDQTIDVAHVETGEQVAHISVTYPTFTLAW
HPKHFLLAYACDDKDDRDRDRDAGTVKLWGLGDRP
NT seq 1188 nt   +upstreamnt  +downstreamnt
atggcatttccaccgagtaccgttaatgctagtaccggtattaccggtactggtaccgga
acttgcccgccacatgatgctggagcagtagccactcgccagagccactcgcgtctcgct
cgcacggttggcggacaagacgagagagaggaaggcagggagagacgagtgactagtgca
tggttgactcttcagcagtgtgcagccatggggttgtcttacctggaggagatgcggaca
tactttgagagccacaacaagcagaaggagtatgttggccacaactctaaggtccacacc
attggttggaacgctgatggccgccgccttgcctcgggctcctacgacaagtgtgttacc
atctttgtgtttgatggacatcgtgagactctgcgcaaggactacacttacaagggccat
ggtgacagtgtggaccagttgtgttggcaccccacacactcggagcaactcacctcagcc
agtggggacaagacagtgagaatctgggacacacgcacccacaagtgttccgcgaccatc
aacactaagggagaaaacatcaacatcacctggtctccggatggacagactattgctgtg
gggaacaaggaggacctggtgtcgtttattgatgttcgtagccaaaagatacgtcatgag
cagcagtttaagtttgaggtgaacgagctgtcctggaacaacaccaatgacttgttctac
ctcaccaatgcacagagtggccagggttacatccatatttataattaccctgaaatggag
ttggttcactcaatacacgctcacccagggaactgcatatgcatcaagtttgagccccag
gggcgctactttgccacagggtcagccgatgctcttgtctctatttgggatgttcaggag
ctgtattgtaaacgtacgcttcccaggctggaatggcccgtcagaaccttgagtttctct
agtgacgggcaactgctagcatcaggaagtgaggaccagactattgatgtggcccatgtg
gagacaggagaacaggtggcccacatcagcgtgacctacccaaccttcacgttggcctgg
catcccaagcacttcctcctagcctatgcctgtgatgacaaggatgaccgtgacagggac
agggatgctggcacggtcaagctatgggggctgggagataggccttaa

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