Portunus trituberculatus (swimming crab): 123512073
Help
Entry
123512073 CDS
T07853
Name
(RefSeq) uncharacterized protein LOC123512073 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123512073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptru03021
]
123512073
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123512073
Transcription machinery [BR:
ptru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123512073
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123512073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
TFIIA
Motif
Other DBs
NCBI-GeneID:
123512073
NCBI-ProteinID:
XP_045124198
LinkDB
All DBs
Position
4:5787172..5828666
Genome browser
AA seq
1928 aa
AA seq
DB search
MSTDASEVAEEYRSSLRDLVNNSKPLITMLTMLAEENRSQASVIVKVIEEHIHEVPGPQK
LPVMYLIDSIMKNVGTQYIKLFAFNIISTFCCVFEKVDERTRKKLYELRTTWNEVFPKSK
LYGLDVKVQAIDPAWPLPIVPSVGGTQPTASKPNIHINPNIIKPGGVKATSLSTSSSQKN
QKDMEILKLKREEELLALERKKLMLEKKKILLQQSRQTKGDTETEKPVNEDPSISSERRS
QFLRSYKIKKKALWDEESKVPNIHLDPRRVYQVLPLVAATSPSPLAQQDPRSRGQEATSR
DPRLAQEQRASGGEASRDPRRSAEVSRDPRLASHSESPKASRDPRLAGKESKEKKDKEKD
KEKEKEKEKERKEKEDKKKEKEHHRSSSKKESSSSPSSSSLSSSTRDSKKKKDSGKSSSS
SKSSSSSSKSSHHEKESTTATITTTTTTLTASTTTTLTASTTTSSSSSSPSTSSSSKDSK
KLPLPLDSVDGPATFKSDRRRSQRMYKKREESPDDTPEPQIKRSRGEVTSDSDSDHYDAN
RPSPSLYNKPAKKVDAGSVTPSATVADTDYRQFTSPPTKTEENVSPTKKDCLIDKLFSKE
DVDYRQLLPQPGMLPTATLPAAFKMADQDDRTPPMDKSHQPPREPLAPLNKDTNSPHHPK
TEPARPTTPAVTELERTRKNSFNSPHAASWEKFRQKNPVFKEYQRQASTSESERDFSPTH
GDQDMPFCGGTSQQLPSSQRPPFPGMPFKDPHGTPHGRPRDAPWQAFEEEERRGHFGRNK
AAQENFKVILEQAQEQRDRGEISELQYQHMANQLRLFTEQEQIREARERDRLQPRPTNQQ
QQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPLPYKGSETDWGAGRGRGGGRD
MADSFRGGGRGGFPGPGIHQQPRNSGRGGRFEEEDSGWGRGGGGGRGWPWRGGRHPREER
GGGVGHSGVWGPHRDNMLEDEWTGEMDLPFVSEETLKAAAREAETRTIEIDGVPREIRTY
GETAVILLDWNDPRILTFGEGHCNIVFDEGKFVLPMRIGEDYKEFTIDGETHRVKLGVPT
QELMLDGRGYQCFYGGKPITVHLAGQPRTVYLDGKPPNVNIGPITNTEFVAGKVQLVIHA
KKVVNLFLDAKPQRFNIDGKPFVLQFTDALRAVLINNVRFPVEFGGLPIGISVRSFRRFL
RFTSLPPGVVPGKVHIRGMETEAQKKAGLPPAPPVPDKFMDGQSRGSPSLDMARNVNFPM
DKPAGAPHLPVSMGQPTDVFGTHQGPALPMAPNPPRPVMPVPPQHSHPMPSALPHPPAPP
QIPTSLTQIPPQFPTPIPSQGAPLPVPMTLPNVAVPNLAQAVTSMAMPVAYRTSQVPATT
FKPTQPKPIDLSALLEDLTRKGLIGQKPLAPSKVRKDKEEADKKKEEEEQREKDELIPFE
LMFTSENLRKRRSWVIESQYRGMQCSSCGLRYPPEQTLQYSHHLDWHFRQNKKQQESTKK
ANTRKFYFSVPDWLQYEEIEDVEERVPSMFETEGIENTMEAEDAEEPSVAVSSDSALGIC
PACHDTFSQFFHQETEEWRYHNAIQVEGINYHPGCHQDLLRKAEEAEKEAKKEEKEKSED
VEMKDVSEEKKDEQKEEEKQDSADASTKDKDKEEETTTAAAATTTTTTTTTTTTTTTTTT
ENEAAGDKENSVAVNGEEMDTTPAPEETPPAEMQLPIRIKEEPVDVEEETTEGITSMLSS
FGGVTIKQEIKEEPADDVFDSLPDPNFHETGECTEEALQTEEGEGRASEDDIEEMEQLWE
PSVVSVNAAETDIASSIDGNMELTSPTEVTTRPAITKIKLNISKPIVSNSNSSNANSDAV
NNNNNEDDGERKKRDALNSSSIDEEVEEFVPPPFTVDLELKPAFRNVELTEQPILQQGVE
ASGLCSIM
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgatgcgagcgaggtggcggaggagtacagatcatccctgagagacctggtg
aacaactctaagcccctgatcaccatgctaacgatgctggctgaggagaacaggtcacaa
gccagtgttattgtgaaggttatcgaggaacacattcacgaggtgccaggaccccagaaa
ctacctgtcatgtacctgattgactctataatgaagaatgttggcactcagtatatcaaa
ctcttcgccttcaatattatatccacattctgctgcgtctttgaaaaggtcgacgagagg
acgcggaagaagctatacgagctacgaacaacttggaatgaggtgtttccaaagtcaaaa
ctgtacggactagatgtgaaggtgcaggccatcgacccagcctggcccctccccattgtg
ccttcagtgggaggaacgcagcccaccgcctcaaagcccaacattcacatcaaccctaat
atcattaaacccggaggagttaaggcaacctctctctccacttcctcctcccagaagaac
cagaaggatatggagattctcaagctgaagagagaggaggagttgctagctctggagagg
aagaaactcatgctggagaagaaaaagattctcctccagcagagccgtcagaccaaggga
gacacagagacagagaagcctgttaatgaagacccaagcatatcaagtgagcgtcgatct
caattcctgcgctcttacaagataaagaaaaaggcactatgggatgaagagtctaaggtc
ccaaacatccacctggacccaaggcgtgtctaccaggtgctgcccttagtggcggccacc
tcgccttcccccttggcccagcaggaccccagatcccgggggcaggaggccacatcccgt
gaccccaggctggcacaggagcagcgggcgtcaggcggggaagcttcaagggacccaagg
cgcagcgctgaggtatcccgtgacccccgcctggcctcacactcagagtcccccaaggcc
tcccgtgaccccaggctggccgggaaggaatccaaggaaaagaaggacaaggagaaggac
aaggagaaggaaaaggagaaagagaaagagaggaaggagaaggaggataaaaagaaggag
aaggagcatcacagaagtagttcaaagaaggagtcatcttcatctccgtcatcttcttct
ttgtcaagttcaacacgagactccaagaagaaaaaggacagtggaaagtcctcttcatca
tctaagtcctcatccagctcctccaagtccagccaccacgagaaggagtccaccactgcc
accatcaccaccactactaccactcttactgcctccaccaccactactctcactgcctcc
accaccacctcctcctcctcatcctctccttccacttcatcctcctccaaagactccaag
aagctgcccctgccattagactcggtggatgggccagccaccttcaagagtgatcggcgg
aggagccaacggatgtacaagaagcgtgaggagagccccgacgacaccccggagccccag
atcaagcggagccggggcgaggtcacatcagattccgatagtgaccattacgacgccaat
aggccgagtccgtcattgtacaataagcccgccaagaaagtggatgcaggcagtgttact
ccctccgccactgttgcagacacagactaccgccagttcacctcgccgccaaccaagacc
gaggaaaatgtgtcaccaaccaagaaggattgtctcattgacaaactgttcagcaaggag
gatgtggactaccgccagctactgccacagcccggcatgctgcccacagccacactgcca
gcagccttcaagatggctgaccaggacgaccgtactccccccatggacaagtctcaccag
cccccaagggaaccattggcacccctcaacaaagacaccaactccccacaccaccccaag
acggagcctgcccgccccaccactcctgccgtcactgagctggagcgcaccaggaaaaac
agcttcaacagtccccatgctgcctcctgggagaagttccggcagaaaaacccagtgttc
aaggaataccagagacaagccagtacctcggagtcagagagagacttcagtcccacacat
ggggaccaggacatgcccttctgtggtggcacctcccagcagctgccctcctctcagaga
ccacccttccctggcatgcccttcaaggacccacacggcaccccacatggccggccacgg
gacgcaccctggcaggcgtttgaggaggaggaacgcaggggccattttggcaggaacaag
gcagcgcaggagaactttaaggtgatcctggagcaggcccaggagcagcgggaccgaggg
gagatcagtgagttgcagtaccagcacatggccaaccagctacgcctctttactgaacag
gagcagatcagggaagccagggaaagggacagactgcagccaagacccaccaaccagcag
cagcagcagcagcagcagccacagcagcaacagcaacagcagcagcagcagcagcagcag
caacaacaacaacaacaacaacaacagcagcagcagcagcaacagcaacagcagccactg
ccgtacaaaggttctgagacagactggggtgcggggcgtggccgcggcggaggcagggac
atggccgacagcttccggggtggcggccggggtgggttccctggccctggcatacaccag
cagccccgcaactcagggcggggtggccgcttcgaagaggaggacagcgggtggggtcga
ggtgggggcgggggtcggggctggccgtggcggggtggcaggcacccgagggaggagcgt
ggtggcggcgtgggtcacagcggggtttgggggccacacagggacaacatgctggaggat
gagtggacgggggagatggacctgccctttgtgtctgaagagacactgaaggcagcagcg
cgggaggcggagacgcgcaccattgagatcgacggcgtgccacgcgagatccgcacctat
ggtgagacagcagtcatcctgctggactggaatgacccgcgcatcctaaccttcggtgag
ggccactgcaacattgtgtttgacgagggcaagtttgtgctgcccatgcgcattggtgag
gactacaaggagttcaccattgatggggagacacaccgggtgaagctgggcgtgcccacc
caggagctgatgctggacggccgtggctaccagtgcttctacggtggtaagcccatcaca
gtgcatctggctggtcagccacgcacggtgtacctggacggcaagccacccaacgtcaac
attggccccattaccaacacagagtttgtggcgggcaaggtgcagctggtgatccacgcc
aagaaggtggtgaacctgttcctggatgccaagccccagcgcttcaacattgatggcaag
ccattcgtgctgcagttcactgatgcgctgcgggctgttctcatcaacaacgtcagattt
cccgtggagttcggtggcctgcccatcggcatcagcgtgcgcagcttccgccgcttcctg
cgcttcacctcgctgccacccggtgtggtgcctggcaaggtgcacatccgcggcatggag
acagaggcacagaagaaggccggcctgccccccgcaccacctgtcccagacaagttcatg
gatggacagagtcgtggttccccatccctcgacatggctcgcaatgttaacttccccatg
gacaagcctgcaggcgctccccatttgccagtgagcatgggccagcccacagatgtgttt
ggcacccaccaggggcctgcactgcccatggcacccaacccaccccgcccagtgatgcct
gtgcctccccagcactctcaccccatgccttcggctctaccacaccctcctgcaccgccc
cagatacccacctcgctcacacagatacccccacagtttcctacacccataccctcacag
ggagctcccttacctgtccccatgaccctgcctaatgtggctgtgcccaacctggcccag
gctgtcacgtctatggcaatgcccgtggcctacaggacctctcaggtgcccgccaccacc
ttcaagcccacccagcccaagcccatagatttgtcggccctgctagaggacctcacccgc
aagggtctcattggccagaagcccctggctccttccaaggtgcgcaaagacaaggaggag
gcagacaagaagaaggaggaggaggagcagagggagaaggatgaactcattccgtttgag
ctgatgtttacctcggagaatctgcgcaagcgtcgttcgtgggtgatcgagtcacagtac
cgggggatgcagtgctcatcgtgtgggctgcgctacccacccgagcagaccctgcagtac
tcacaccacctggactggcacttccgacagaacaagaagcagcaggagtccaccaaaaag
gcaaacactcgcaagttctatttctccgtcccggactggctgcagtatgaggagattgag
gatgtggaggagagagtgcccagcatgtttgagacggagggtattgagaacaccatggag
gcagaggacgctgaggagccgagcgtagctgtgtcctcagactccgcactgggcatctgt
cccgcctgccatgacaccttctcccagttcttccaccaggagacagaggagtggaggtat
cacaatgccatacaggtggagggaatcaactaccaccccggctgccaccaggacctctta
aggaaggctgaggaagcagagaaagaagcaaagaaagaagagaaagaaaaatcagaggat
gtcgagatgaaggacgtgtctgaggaaaaaaaggacgaacagaaagaagaggaaaagcaa
gactcggctgatgcaagtacaaaagacaaagataaggaagaagaaactaccacagcagca
gcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
gagaatgaggctgcaggagacaaagagaatagtgtagctgtcaatggagaggagatggac
acaacaccagcaccagaggagactccacctgccgagatgcagcttccaatccgcatcaag
gaagagccagtggatgtggaggaagagaccactgagggcatcaccagtatgctgtcttcc
ttcgggggcgtcaccatcaagcaggagatcaaggaggagccggccgatgatgtgtttgac
tctctccccgaccccaacttccacgagactggcgagtgtacggaggaggcactgcagacc
gaggaaggggagggcagggcgtcggaggatgacattgaggagatggagcagctgtgggag
ccttcagtagtgtcggtcaatgctgctgagacagacattgccagttccattgacgggaac
atggagttgacaagccccactgaggtaacaacacgaccagccatcaccaagatcaagctc
aacatttccaagcccatcgtgagcaattccaatagcagcaacgccaatagtgacgccgta
aacaataacaacaatgaagatgacggggagcgcaagaagagagatgcactcaactccagc
agcatagatgaggaagtggaggagtttgtcccgccaccgttcactgtggacctggagctc
aagccagctttccggaatgtggagctgacagaacaacccatcctgcagcagggagtggag
gcatctggtctgtgctccatcatgtga
DBGET
integrated database retrieval system
