Portunus trituberculatus (swimming crab): 123512248
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Entry
123512248 CDS
T07853
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru04512
ECM-receptor interaction
ptru04518
Integrin signaling
ptru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123512248
04518 Integrin signaling
123512248
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123512248
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptru00536
]
123512248
Glycosaminoglycan binding proteins [BR:
ptru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123512248
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
EMI
Motif
Other DBs
NCBI-GeneID:
123512248
NCBI-ProteinID:
XP_045124447
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Position
33:2890123..2962323
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AA seq
863 aa
AA seq
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MLAARWVVVVLVVVMVVVLGAETQREARERGRRRGQRRRARIESCTRVEAFKKKLKGNFC
PYTVSKMVSCKVLNGTETYTGRVAVGQRSRLMTLTRPHYSITFKEVQETEYGCCPGFHGD
NCDNRCFNCTQIQHLESRVRTLEAKLLRSPSASLPPLKDTVIQMGLPDTSHVQDHPLNGK
RGRGRGRGSNRGRNKNSNRHRGRGSDRRVSGRRGGNEVLPEATYEAVSSSPDQCSCPPGP
QGIPGRDGIPGQDGSPGPQGPPGPAGPAGPPGLPGLVTSNSGKKGQILSAEIQPSDSRIL
SCWQLPVGDSSVSAGDGRQDGQPNYIPGSPGQPGSPGVPGARGEPGVAGRPGPVGLPGRP
GEPGPPGPQGPTGPQGLPGVGVPGPKGDRGLDGLPGGKGSNGPPGPVGLPGAPGPKGDPG
LNGIAGNQGLPGPKGEIGPLGPSGPAGRPGQRGDIGPVGPPGVPGPPGPPGPPGPSSHQG
PGGFGLGNYYGDYPDVAFEGSGDNLHIDDDEYPLERPGLPLPRGFPGPPGPKGDKGEPGS
PGIRGDRGSAGIQQGPRDGEQEASITELYLTVKSLREKMNLMDARVRILEREVARITGQA
GGETLLPGHPDLPYNPSREVPDASPDYNTQTDDLLRRVDRLNGLVNSATPTRGGGRPGSL
EPPREIYPVGLDGEGLEDNNSTFSPPTPEDELPAPDTSRVEEETTTLDSAYEDGASGVEY
DYSEYEPYEYGDYLEYTYYDYGENTRTKRQHTAANDVKGTHESARTSGDSEHIKSGRRQK
QRISTKKRKNTQKVISETDSHKRETIPLSTGQQQGDQEAGRGGRTYSNRRIENLHPLKAF
GLRYRRGLDYLLGKSSKEDVTWI
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgttggctgcaagatgggtggtggtagtgctggtggtggtgatggtggtggtgctgggg
gcagagacgcaaagggaggcgagggagagaggacgcagaagaggacaacgaagaagagcg
cggattgaaagttgcacgagagtcgaggcattcaagaagaagctgaaggggaacttctgc
ccctacacggtgagcaagatggtgtcctgcaaggtgctcaacgggacggagacatacacg
gggagggtcgctgtcggccagaggagcagattaatgacgctgactcggccccactactcc
atcacgttcaaggaagtgcaggagacggagtacggctgctgtccaggcttccacggcgac
aactgtgataacagatgcttcaactgcacgcaaatccaacacctcgagtctcgggtccgc
acactggaggccaaattactgcggtcaccatctgcgtcactcccgcccctgaaggacaca
gtgatccagatgggccttccagacacttcccacgtccaggaccaccccctcaatggtaag
cgtgggcggggacgcggacgaggcagcaacagaggacgcaacaagaattccaacagacat
cgagggcgtggaagtgacaggcgagtgagtgggaggcgcggcgggaatgaagttcttcct
gaggcaacctatgaggctgtgagctccagtccagaccagtgttcctgccctcccggacct
caaggcatccctggccgcgatggcatccctggtcaggatggaagcccaggaccccaggga
ccccccggaccagcagggccagcagggccaccaggactacctggtttggtaacaagtaat
tcaggtaagaagggacaaatattgagtgcagagatacaacccagtgactctaggatacta
tcttgctggcagctgcctgttggtgacagtagtgtttccgcaggtgatgggcggcaggat
ggtcaaccaaactacatccctggctcacctggccagcctggcagccctggtgtgcctggc
gcccgtggtgagcctggcgtggcaggcaggccagggccagtgggactgccaggccgccca
ggtgagccaggtccccctggacctcaaggaccaacaggcccacaaggactgcctggagtg
ggcgtgccaggacccaagggtgaccgtggcctggatggactgcctggaggaaagggttca
aatggaccgccgggtcctgtggggctgccaggagcaccgggacccaagggtgaccctggg
cttaatggcattgctggcaaccagggcctgcctggacccaagggggagattggccctctg
ggaccatcaggaccagctggtagacctgggcagcgaggagatattggccctgtaggacct
ccaggtgtcccaggtccccctggtccccctggaccacccggaccatcatcacaccaggga
cctgggggatttggtctgggcaactactatggggactaccctgatgtggcatttgagggc
agcggtgacaaccttcatatcgatgacgatgaatatccacttgaaaggcctggtcttcca
ttgcctcgtggtttcccggggccaccgggacccaagggtgataaaggagaaccagggagt
ccaggcatcagaggagacagagggtctgctggcatccaacaaggccctcgagatggtgag
caggaggcctccatcacagaattgtacctgacggttaaaagtctcagagaaaagatgaac
ttgatggatgctcgagtccgcattctggagagggaagttgcaaggatcactggtcaagct
ggtggggagacgctgctgcctggccaccctgatttgccgtacaaccccagcagagaagtg
cctgatgcttcacctgactacaatacccagactgatgacctcctgagacgggtcgaccga
ttgaatggactggttaattctgccactccaacgagaggaggaggacgcccaggctctctg
gagccaccccgagagatttaccccgtgggacttgatggggaaggactagaagataacaac
agcaccttttcaccaccaacaccagaagatgaactaccagcaccagacacgtccagagtg
gaggaggagacaaccactcttgactctgcgtatgaggatggggcgtcaggggttgagtac
gattactcagagtatgaaccctatgaatatggtgactatttagaatacacttactatgat
tatggcgagaacacacgcacaaagagacaacacacggctgcgaatgacgtgaagggaacg
catgagtcagccagaacatcaggggattctgaacacataaagagtggcaggagacaaaag
cagagaatatcaacaaagaaaagaaaaaatacacaaaaagtaatatcagagacagattca
cacaagagggagaccataccactcagcacaggacagcagcagggagaccaagaagctggc
aggggaggaaggacatacagcaataggaggatagagaaccttcaccctcttaaagccttt
ggtctccgatacagacgtggcctggattacctcctggggaagtctagcaaagaggatgtc
acttggatatag
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