Portunus trituberculatus (swimming crab): 123512285
Help
Entry
123512285 CDS
T07853
Name
(RefSeq) collagen alpha-2(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru04512
ECM-receptor interaction
ptru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123512285
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123512285
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ptru00535
]
123512285
Proteoglycans [BR:
ptru00535
]
Extracellular matrix (ECM) proteoglycans
Others
123512285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
123512285
NCBI-ProteinID:
XP_045124541
LinkDB
All DBs
Position
33:complement(4067664..4108825)
Genome browser
AA seq
1014 aa
AA seq
DB search
MNMPASPTSAEGRWWWWRAAAILVVLLVVAPTRTQAQYEIYDELVGPCADYQPGEDDLQA
FDFIRQFQLDVLEQNYTGVKRVRGSNRMQTAYRLKADANLQIATRDIFPQGLPQEFSMIC
TYRARRQPRNPWDIIRINDLRERPQFAVTLNPIRKFVELSILSYAGSLQTIRFEGAEEAF
NEKWHKLHFGVFRDRVTLHLDCERTTELPIDPIGPIDVNGNIYIAKQQGSQRTVPRRRSR
SNIELQWMVMSCDPSSPERETCDELPQFVQVDSEQVGAQQCEVVCPRGPPGLNGTDGRRG
RRGLPGPQGPSGDVGLPGIPGSEGQRGPPGEPGPLGPRGPPGSQGEQGFQGIAGSPGPPG
PTGLTGALGPIGPKGNTGDRGLPGPIGAPGPRGDPGPKGVPGDAVLVSGPSGGQGSPGQP
GLQGLDGLDGAPGAPGSKGDKGDRGDRGNTGRRGQRGEKGNTGGPGQPGPRGFPGETGPP
GLPGRPGGEANGETVPGPPGPPGPYGPVGPPGEPGTIGPVGPPGPEGFPGVPGDKGERGN
EGIPGNDGSKGEPGRTGVPGEKGEKGIGGLPGVPGLIGKPGVVGLPGPEGPMGPPGPQGI
KGDRGARGEPGLSGEPSPPGQPGPQGPQGTQGNRGEEGPSGPPGLPGPAGAPGNPGQLGL
IGPKGHPGLPGKKGDPGKDGEQGVAGPMGPPGTRGLSGSPGQSGLRGRDGANGKPGPQGP
IGPRGLPGPQGPSGPLGPAGPPGLPGFVGKPGPPGPPGPPGLPGDSSAQMMEVVSGERAY
GVPGVAGPMGERGMPGERGADGERGPQGKTGHPGMPGPSGSPGMPGPPGQRGAQGNDGLP
GRPGREYTEEQLRGICASVLRDNMAEIAQKLRGPRGLPGQGRRGPPGEPGDVGPQGVPGT
PGEVGPRGYPGFPGPPGSHGPAGERGQRGYKGERGQMGEGRDGKMGPPGDPGPPGPPGTG
LPGRIGERGPPGLTGPQGGRGAPGAQGPPGHCEYCNPALAYQSSVAAQGNTKGP
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgcctgcctcgcccacgtctgctgagggaaggtggtggtggtggagggctgca
gccatactggtggtgctgctggtggtggcgccgacccgcacgcaagcccagtatgagatc
tatgacgagttggtggggccctgcgcggactaccagccaggggaggacgatctacaggcc
ttcgacttcatccgccagttccagcttgatgtcttggaacagaactacactggcgtgaag
cgtgtccggggctccaaccgcatgcagaccgcctaccgactcaaggctgacgcaaacctt
cagatcgccacgagggacatcttcccccaaggactgccgcaggagttctctatgatctgc
acctaccgcgcccgccgccagccccggaacccctgggacatcatcaggatcaatgacctc
agagaaagacctcagtttgccgttaccctgaaccccatcaggaagtttgtggagctgtcc
atcttgtcctatgcgggttccctccagacgatcagatttgaaggggccgaggaagccttc
aatgaaaaatggcacaaactccactttggcgtcttcagggaccgtgtcactctccacctt
gactgtgagaggaccacagagctgcccattgaccccatcggccccatagatgtcaatggg
aatatctacattgccaagcaacaaggatcgcagcggacggttcctaggagaaggagcaga
tccaatatcgagctgcagtggatggtgatgagctgcgacccatccagtcctgagcgtgaa
acatgtgatgaactgccccagtttgttcaggtggattctgagcaggttggcgcgcagcag
tgtgaggtggtgtgcccccgcggtcccccgggcttgaacggcactgatggtcgcaggggg
aggaggggtctccctggtccacaaggaccttccggagatgtaggtctgccaggcatccct
ggcagtgaagggcagcgtggtcctccaggagagccaggacctttgggaccacgaggacca
ccaggcagccagggggaacaaggattccagggaatagctggctctcctggccctccaggt
cctactggactcacaggagcactgggacctatcggcccaaagggaaacactggagatcgg
ggtcttcctggccccataggtgcccctggtccacgaggtgatcctggacctaagggtgtg
cctggtgatgctgtacttgtctctggtccttcagggggacagggatctccagggcaacca
ggtctccagggtctggacgggctggatggggctccaggggcaccgggcagcaagggagac
aaaggagaccgaggtgaccgcgggaacactgggcggcgaggccagcgtggtgagaagggc
aacacaggaggaccaggccagcctgggccacgtggctttcccggcgagactggaccacct
ggtctgcctggaaggcctggtggagaggccaatggagaaactgttcccggaccaccaggc
ccacctggtccatatggtccagttggtcctcctggtgaaccaggcaccatagggcctgtt
ggcccccctggtccagaagggtttccaggagtaccaggggataaaggtgagcgagggaat
gaaggcatcccaggcaatgatggatccaagggggagcccgggcggacaggagttcccggt
gagaagggagagaagggcattggtggcctaccaggcgttccaggcctcattggcaagcct
ggtgttgttggactgccaggaccagagggccccatgggtcctccagggccgcaaggcatc
aagggtgacagaggtgcacgtggagagccaggcctctctggcgagccatccccgccaggc
cagcctggaccacaaggtccgcagggaacacagggcaacaggggagaggagggtccatca
gggccaccaggtcttcctggccctgctggtgccccaggaaatcctgggcagttgggtctc
attggacccaagggacaccctggattgccgggtaaaaagggtgacccagggaaggatgga
gagcaaggagtagcaggtcccatgggaccacctggcaccagaggactctcaggatctcca
ggtcaaagtggacttcgaggccgtgatggagcaaatggcaaaccagggccacaaggaccc
ataggtccccgagggcttccaggacctcagggaccatcaggtccattaggacctgctgga
cccccaggccttcctggctttgtgggcaaaccagggcccccaggtccccctggacctcct
ggacttcctggtgactcatcagcacaaatgatggaggttgtcagtggtgagcgtgcgtat
ggagtgccaggtgtggcaggacccatgggggagaggggaatgcctggtgagcggggagct
gatggtgagcgaggtcctcaagggaagacaggccaccctggcatgccaggcccatcgggt
tccccagggatgccgggcccacctggccagcgtggggcacaggggaatgatggtttgcca
ggcagacctggtcgggagtacacagaggagcagctgcgggggatctgtgcctctgtgctg
cgagacaatatggctgagattgcccaaaagctccgtggtcctcgagggttgccagggcag
ggacggcgaggtcctccgggtgaaccgggagatgttggtccacaaggtgtccctggaacc
ccaggagaggtaggtccccgaggctacccaggcttcccagggccacccggatcacatgga
ccagcgggggagcgaggacagcgaggctacaagggtgagcgtggtcagatgggagagggc
agagacggcaagatgggcccaccaggagatccaggacctcctggaccaccaggcacaggt
cttccaggaaggataggagagcgtggaccacctggtttgacaggtccccagggtgggcgt
ggagctccaggtgcacagggtcccccaggacactgcgagtactgcaatccagcacttgcc
taccaatcctctgtagctgcccaaggcaacaccaagggcccatga
DBGET
integrated database retrieval system
