Portunus trituberculatus (swimming crab): 123512606
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Entry
123512606 CDS
T07853
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123512606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptru03021
]
123512606
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123512606
Transcription machinery [BR:
ptru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123512606
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123512606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_3
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH_4
zf-C2H2_10
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
123512606
NCBI-ProteinID:
XP_045124972
LinkDB
All DBs
Position
34:complement(9864213..9872685)
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AA seq
273 aa
AA seq
DB search
MEILVANVDKVTFDIEVQLEEQVGAQMLPFPGMDKSIAAVCTFYMRGNCSKSVNCPFRHV
RGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYSRFNACHNKECPFLHINPDMK
MKDCPWYDRGFCRHGPQCRNRHVRRVLCMNYFAGFCPDGPSCKFMHPRFELPQVMDDKQT
SHKKQGITCHYCGETGHKASQCFKANPELREQNAIISLASGGPKNQPGKDTSSQNSYDTG
NRLDNITCFKCGEQGHFANRCTKGQFAFLSSGN
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggagatcctagtagccaacgtggacaaggtgacgtttgacatagaggtgcagctggag
gaacaagtgggcgcccagatgctgcctttccccggcatggacaagtccattgctgcagtg
tgtactttctacatgagagggaactgcagcaagagtgtcaactgtcccttccggcacgtg
cgtggcgaccgcacggtggtatgcaagcactggctgcgtggcctctgcaagaagggcgac
cagtgtgaattcctccatgaatatgacatgtccaagatgcctgagtgttacttctactcc
agattcaatgcgtgccacaacaaggagtgtccattcctacacatcaaccctgacatgaag
atgaaggactgtccctggtacgaccgagggttctgccgccacggaccacaatgccgcaac
cgtcacgtcagaagagtcctgtgcatgaattactttgctggtttctgccctgatggtcca
agctgtaaatttatgcacccgagatttgagttgcctcaggtgatggatgacaagcagacg
tcacacaagaaacagggcatcacgtgtcactactgcggggagacgggacacaaggcttca
cagtgcttcaaggcaaacccagagctcagggaacagaatgccattattagtttggcgtca
ggtgggcccaagaaccagccaggcaaggacacgtcatcacaaaacagctatgacaccggc
aacagactggacaatatcacgtgcttcaagtgtggtgaacaggggcacttcgctaatcgg
tgcactaaaggccagtttgctttcctcagctctggcaattga
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