Portunus trituberculatus (swimming crab): 123513289
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Entry
123513289 CDS
T07853
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru04382
Cornified envelope formation
ptru04512
ECM-receptor interaction
ptru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123513289
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123513289
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
123513289
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptru04147
]
123513289
00536 Glycosaminoglycan binding proteins [BR:
ptru00536
]
123513289
Exosome [BR:
ptru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123513289
Glycosaminoglycan binding proteins [BR:
ptru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123513289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123513289
NCBI-ProteinID:
XP_045126302
LinkDB
All DBs
Position
35:19595495..19803977
Genome browser
AA seq
2168 aa
AA seq
DB search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NT seq
6507 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgttcgcaggaggcatgaggttaccgacttcccctcccctaccaaggggctca
gtcatgttttttcttctgcttctcgctgttttccattcagcggcttcgcaggactggagt
ttctggggaggtgacaccactgatgctccagctgaggtgccacatgctgcgctgggggat
gtggcacatcagagcgacgccgaagtagaagataattacaatgattattatgatgtgaat
gaagttgatattgacaagacagatgatggatttggtcttagtgccagtgccaaccttagt
gctgatgaaccatataacaccagacgatattggtacaacagcacctatagctacggagac
cgaactggtgacagtggccatgctagtcctagtgatagaagatatgattatagtaatagg
agagttggtagcaggtctgacaacagtgatgggggtgataactataattccaatgatgat
ggaggatacagttctggaagcacccataattcaaccagttacaggacatggtggacctac
agtaaagatggtgacagaggtgatagagatggtcaggatgtggatgatagactaaatgaa
aatgaagtacgaggagactatggaagaactggttctggtactagctacgaaagtggaaga
tatggtggcagcgacagtggaggtgccggcagtggctacagtggaagtgatagctatggc
agcagtggaaacgttggtggtgtttacggtggcagaaacagctatggcaccagtgggagc
accagtggcggctatggtggtggagacaactatggcggcagtggaggcgccagtggaggt
tatggtggcggggacagttatggtggcagtggaggcgctggtggcagctatggtggtgga
gacagctatggcggcagtggaggtgctggtggcggctatggtggtggagacacctatggt
ggcagtggaggtgctggtggcggctatggtggtggagacagctatggcggcagtggaggt
gctggtggcggctatggtggtggagacagctatggcggcagtggaggtgctggtggcggc
tatggtggtggagacagctatggcagcagtggaggtgctggtggcggctatggtggtgga
gacagctatggcggcagtgaaggtgctggtggcggctacggtggtggagacagctatggc
ggcagtggaggtgctggtggcggctatggtggtggagacagctatggcggcagtggaggt
gctggtggcggctacggtggaagtgacagctacggtggcagtggaggcgccggtggtggc
tatggtggtggagacaggtatggtggcagtggaggcgtaggtggcggttatggtggaagt
gacagatatggcggtggtggtggtggttatggctatgatgatactactggtgtgagacca
caggtgcagccgcgaccttcaggctaccctggctctggtgccgaactgcagcaagagtgt
ggaggcgaggactgcaacacaggtggatgcaaatgcattggagagaagggttcaagggga
gctccaggattgccaggccctactggagagaagggacagcagggcttcccaggcatggaa
ggactcatgggtcccaagggaagcaaaggagaaccgggtccacaaggtcctacaggtccc
aaaggagatagagggaagatgggtctgaatggcttcccaggtatcaatggcattccaggc
attccaggtgtgcagggacccagaggcagacctggccttgatggttgcaatggcaccgat
ggtgaacctggagtgtctggcgttcctggaccaccaggcccaagaggtttccgtggtcca
gagggtcagaagggcataaagggagaacctgcaattgggccttgcacctcttctaagggt
gaaaagggtgagccaggccgtgatggtcgacaggggccacagggtccacctggcttgcct
gggccgcagggagacaatggctacagaggtagagatggagagaagggtgaaaaaggatat
attggacccaagggagacaaaggagcaatgggagtagccttcaagggacctcctggacaa
aggggagagaagggacaaaagggtgaagcgcaagattgccccatagagcctcagatatat
cacaattgtactggaattgcattcctgggcaccaaaggagacaaaggtgccaagggtatg
agaggacgagatggcataccaggcttcagtggtagcaaaggtgactctggaaagaatggc
cctcctggagagaaaggtctacctggcctacctggtcccccaggacgtgaaggatttcct
ggtccacctggccccaatggttacaagggtgacctgggaccagctggtcttgatggcttg
ccaggtctcaaaggagacaaaggtgaagcaggatatcctggcagagatggtgagaaagga
aaccaaggtcctccaggaccttccaagggtggcccacaaggtccacctggtcctaagggc
ttgactggcttgccaggccctcgaggcaacgatggaatagacgggcagccaggtcgccgt
ggatctccaggtgtgccgggtggtcctggccaacctggaaatcctggtagagagggttct
cctggccagaagggagacaagggtgtcagtggacgaccaggtgatgcaggtccacaagga
ccaccaggcctgccaggtgagcgtggggaagctggccgcccaggaccaaaaggaaacaag
tgcttctccattgcaggagaaccaggaaccccaggatcaccaggcaatcctgggagggat
ggcatctctggaccccctggactcatgggacctagaggcatacctggagacagtaaggat
ggcatccctggtggcattggagaaattggtgaccgtggtttgcctggtgtcccaggcacc
cctggccaggatggcataccaggtcgccctggaactaaaggtgatgctggtcaagactgt
gagtgtggtgagtgtgagaagggtgtgaagggtttcccaggccctcaaggtagtccaggc
atttcaggagcacgtggtccaccaggacctattggctacccaggcgagagaggtgaagat
ggtcaggtcggggtgccaggattgcctggcaaggagggtgaagctggtcagccaggcaat
ttaggtagcaagggagaaaaaggtgattctgctgtggcctacccaggaccaccaggtgaa
aaaggtgaaaaaggtcgaccaggcttgcgaggtgaaattggacagaaaggagagaaaggt
ttaagtggaagtaaaggtcttcagggtcttcatggtttacttggacgcaaaggagataaa
ggtttgagaggcttagatggcgcaaaaggtgaaagaggtttcccaggattctgccagaaa
ggagagagaggaattgatggtactgatggtgagaagggcacaaagggagaaagaggtcga
cctggtgaagatgccttggctagtagtttgtgtaataatgttactggtccagctggagaa
aaaggagacccaggccctcgaggatatgcaggagagaaaggaacagttggccttgatgga
ataaccggtgagaagggtgagccaggcagcccaggtcggccaggttcaccaggtctctca
ggccgaagaggtgaaaagggacccatgggtgcaccaggcttccctggagagaaaggtgaa
cgaggacctgcaggcctttcaggaagaaatggagccaaaggcagcaaaggtgaagaggga
cggccaggtgtgggtcggcctggagttccaggtatcccaggtatcaaaggagaacaaggt
ctaccaggattgccaggcaaaaatggttcccctggatcaccaggcacacagggaccacct
ggtatcaagggagagaagggaataccaggtcttcatggtctggttggtatgaagggtgac
aaaggtgatatgggacctccaggactgattggccagacgggacctcgtggtttacctggc
atggatggacagaaaggtattgatgggctaccaggaccccctggacctagtggtgtggtc
ggtttgcctggcatcaagggtgacaggggactaacaggtcctgctggccccaagggatca
cctggagctcctggacagccaggtttgcctggacggccgggcaatgatggccggccaggc
ttgccaggggcaaagggagaaatgggtattgcgggcttccctggtaacccaggccttgct
ggtcgcagcggtctccaaggacaggtgggacaaaaaggtgaaagaggtgtgcaaggactt
cgaggggaggtcggtgttcctggcagggaaggactgagaggagacaagggtgaacgagga
ttaatgggtgaaccaggcattgctggagtatcatcagagaaaggagagaaaggcaacact
ggtcctccaggacgacctggattgtttggacagcctggaaaacctggccctcagggtcta
cctggacctaagggtcgtgatggatttggtcttccaggtcctccaggagaacaaggccct
ccaggacttcctggtctaaatggtccagagggaaaccaaggtttgccaggcgatgatggc
cttcagggtcgtcaaggagacaaggggctgcaagggttccctgggactcctggagagccc
tgtaaccttgttattggtccaaagggtaacaagggagaagcaggttttgatggcttgaga
ggggagaagggcaacactggatcagaaggtactccagggttggatggactacccggccag
tctggagacaagggacttcctgggctgcgtggtgtgcctggtataccaggccagaaaggt
agcaaaggtgatcctggtccagctggccaacaaggaccagaaggactccctggtcttgat
ggtcgcactggtgtgcagggtcctaagggtgatcctggtcttcctggggcacctggaaac
cctggcattgatggccttaaaggggagaagggtaacacaggaccttggggacccaaagga
caaaaaggaagaaccattaaaggtgaaaagggacttcctggtgaagctggaaaacctgga
acagatggagcatctggagaaaagggttctaagggtgatatgggattccctggattgcct
ggacaaagaggttataaaggagatgcaggtctagcaggatttgatggagcaaagggtgaa
cgtgggccttccggtcctgctgggtcaccagggcaggatggtagaccaggtttaccaggt
gaacaaggtttagtaggacctccaggagacagaggcctcccaggtcaacctggtttacct
ggtcctaagggaccaaagggtgacataggtctccaaggtcttgcaggtcaaccctgtcta
ccaggacctaagggagagagaggcatcaatggtttaccaggtcgcactggagaaaaggga
gtccagggagccaagggcttcaatggtttaccaggtgctcctggtcgacctgggctacca
ggaacaaagggggagagaggcctccctggccttgagggtcgtgctggaattcctggaata
aagggtcagcgaggcccacctggtcctcctggacccatagggcctatgggtccagcaggt
agcccaggtatgcctggcatgccaggtgccaaaggagaccgtggccccgatggactgcca
ggaataatgggtcctcaaggcatgaagggagacagaggttttgcaggtgcaccaggattc
cagggtgctatagggctgcaaggaagcaagggtgagcctggaaggagctgtactgagcag
caaccttattactcggggacacttgtggtgagacattcgcagaccacttatgtaccgcag
tgtgaagctggacacttcaagctgtgggatggtttctccttgctttatgtagaaggcaat
gaaaaagctcatcaccaagatctaggcttggcaggttcatgtgtgagaagattcagcaca
atgccattcatgttctgtgatttcaataatgtatgcaattatgcctcaagaaatgacaag
tcctattggttgtctaccaatgaaccaattcccatgatgcctgtttctgacacggccatt
caaccatacatatcaagatgtgtggtgtgtgaggcaccatccaatgttatagctgtccac
agccagtctctctcagtgcctgactgtccacagggatggagcagcatgtggataggctac
tcctttgttatgcacactgcagcaggtgctgaaggcggtggacagtctctcagtagccca
ggatcatgtcttgaagacttccgtgctacaccattcattgaatgcaatggagccagagga
acatgccactactttgccaacaaattcagtttctggcttgccacaattgaggacagaaat
cagttctcaaggccagtgtcagaaactctaaaggctggaagccttttgacaagagtttca
agatgccaagtttgcatgaagtactag
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