Portunus trituberculatus (swimming crab): 123513555
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Entry
123513555 CDS
T07853
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123513555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123513555
03041 Spliceosome [BR:
ptru03041
]
123513555
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123513555
Spliceosome [BR:
ptru03041
]
Complex B
Other components
Prp19-related factors
123513555
Complex C
123513555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_12
NRDE-2
TPR_8
Motif
Other DBs
NCBI-GeneID:
123513555
NCBI-ProteinID:
XP_045126725
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All DBs
Position
36:complement(3588146..3603702)
Genome browser
AA seq
858 aa
AA seq
DB search
MLMDTSTIIIETDDLQYEEELLRNPFSVKHWLRYTEHKKDAPPDKVNKVYERALLQMPGS
YKLWHQYLRLRMQQVKGRCITDPEYESVNNTFERALVFMHKMPRIWIDYCQFLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMAYSIPETAVRVWRRYLKLCPEDTEDCISYL
ISIGRLEAAAKKYEWCVNTDTFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISALFERARDVYEEALRSVMTVRDFTQVFDSYAQFEELML
KRRMEEVGPDAVLEDETDIELRLARYEDLIQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GQPKMIVTTYMEAVKTIDPKQATGKLYSLWVNFAKFYEENGQIVDARIIFQRATEVAYVR
VDDLASVWCEWAEMEIRHDNEEEALKLMKRATAPPPQKVAYNDESEPVQRRVYKSLKLWS
MYADLEESLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQESNYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLQRYQGTKIERARDLFEQCLEKCPPSYAKNLYLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLAIYNIYLQHAQQIYGITKTREIYQEAIQDLPDEGAREMC
LRFADMERKLGEIDRAREIYTYCSQICDPRLTQEFWARWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASADTVAGTVSDLAPGAKDGMRMLEARAVAMNHLEEPPTSTS
APAPHAAAGGGGSKIMFVRGSTTKREEEVADAARTANPDEIDIDDEDDDDEEEEDDMPQT
REIPSSVFGQLKKDADQS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgttaatggacacctccacaatcatcatcgagactgatgaccttcagtatgaggaggag
ctactgcgtaaccctttctccgttaagcactggctgcgttacacagaacacaagaaggat
gctccacctgacaaagttaacaaggtgtatgagagagccttgctgcagatgccaggaagc
tacaaactatggcatcagtatttgaggctgaggatgcagcaggtgaagggccgctgcatc
actgacccggagtatgagagcgtcaacaacacctttgagcgtgcgctggtcttcatgcat
aaaatgcctcgaatctggatcgactactgccagttcctgatgaaccagcgcaagattact
aggaccaggaagacatttgaccgtgctctgtgtgcgctgcccatcacccaacacaaccgc
atctggccactctaccttaagtttgtcatggcctacagcattccggaaacagctgtgcgt
gtgtggaggagatacctaaagctgtgccctgaggataccgaggactgcatcagctacctc
atctccattggacggctggaggcggcggccaagaagtatgagtggtgcgtcaacacagac
accttcacctctaagtatggcaagtccaagcaccagctgtggtctgagctgtgtgaactc
atctccaagaacccacaggaaacaagcttgaagaatgcagaggccatcatccgccacggc
ctgcagaggtacacagaccaggttggaatgctgtggaactccctggccgagtattacatt
atcagtgcactgtttgagagggccagggatgtgtacgaggaagctctacgcagtgtgatg
actgtccgggacttcacacaagtgtttgattcatacgctcagtttgaggagctgatgctg
aagcggcgcatggaggaggtggggccagatgcagtcctagaggatgagacagacatagag
ctcaggctggcacgctatgaggacctgatacagagacgacccttgttgctgaactcagtc
atgctgcggcagaacccccacaatgtgctggagtggcaaaagagagtgactctttatgaa
gggcagcctaagatgattgtgacaacatacatggaggcggtgaagaccatagaccccaag
caggccactgggaagctgtactccttgtgggtcaactttgctaaattctacgaagaaaat
gggcagattgtggacgcccggatcatcttccagcgcgccacggaggttgcctacgttagg
gtggatgacctggccagtgtgtggtgcgagtgggctgagatggagatacgacatgacaat
gaggaggaagcactcaagctgatgaagcgagcgacagcaccaccgccacagaaggttgct
tacaatgatgagagtgagccagtgcagcgtcgcgtgtacaaatccctcaagttgtggtcc
atgtacgctgacctggaggagagccttggcaccttcaagtcctgcaaggctgtatacgac
cgcattattgacctgcgcatcgccactccgcagattattattaactatggcatgtttctt
caggagagcaattactttgaagaagcctttaaagcgtatgagaaggggatttccttgttc
aagtggccgtatgtgtatgacatctggaacacttacctcaccaagttcctgcagaggtat
caaggcaccaagatagagagagcaagggacctatttgagcagtgccttgaaaagtgtccg
ccaagctacgccaagaacctgtacctgctgtatgccaagatggaggaggagcatgggctg
gccagacacgccatgcaggtgtatagccgcgccaccaaggctgtgccaccggaggagaag
cttgccatctacaacatctacctgcagcatgcgcagcagatatatggcatcaccaaaacc
agggagatctaccaggaagccattcaggacctgcctgacgagggggcgcgggagatgtgc
ctgcgctttgccgacatggagaggaagcttggtgagattgaccgtgccagggagatctac
acgtactgcagccagatctgtgacccgcgcctcacgcaggaattctgggcacgctggacg
gacttcgaggtggcacatggaaatgaagacaccatgaaggagcttctgaggataaaacgg
tccatgcaggccaagtacaacacacaggtcaacatgatgtcagctcagatgctggcctcg
gctgacactgtggccgggacggtgtcagacttggctccgggtgcaaaggacggcatgcgc
atgttggaggcacgtgcagtggccatgaaccacctggaggagccacccaccagcacctct
gccccggcaccccatgctgctgccgggggtggtggttccaaaatcatgtttgtgcgaggc
tccaccaccaagagggaggaggaggtcgccgatgccgcccgcactgccaacccagacgag
attgacattgatgatgaagacgacgatgatgaggaggaggaagatgatatgccacagacg
agggaaattccatcttcagtgtttggtcagctgaaaaaagatgcagatcaaagttaa
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