Portunus trituberculatus (swimming crab): 123515917
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Entry
123515917 CDS
T07853
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123515917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123515917
03041 Spliceosome [BR:
ptru03041
]
123515917
03009 Ribosome biogenesis [BR:
ptru03009
]
123515917
03016 Transfer RNA biogenesis [BR:
ptru03016
]
123515917
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123515917
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123515917
Spliceosome [BR:
ptru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123515917
Complex C
U4/U6.U5 tri-SnRNP related factors
123515917
Ribosome biogenesis [BR:
ptru03009
]
Eukaryotic type
Pre-60S particles
Helicases
123515917
Transfer RNA biogenesis [BR:
ptru03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123515917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123515917
NCBI-ProteinID:
XP_045130751
LinkDB
All DBs
Position
40:complement(23614503..23640659)
Genome browser
AA seq
1021 aa
AA seq
DB search
MACFGDDLFDFVENEGDTQVQVLPDTEEVSTYESEKAAEELNLLLGKRTNEDDSKSEKKN
KKLRSQVEAAESELRLTEEMPRISIHTIESVEACTHEVAVPPGELYVPLKPPKEKPARTY
PFILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVGEYAIAMCLQNKQRVIYTTPIKALSN
QKYRDFCDEFTDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREVGWVIFDEIHY
MRDKERGYVWEETIILLPPTVHFVFLSATIPNASQFAQWICHLHHQPCHVVYTDYRPTPL
QHYIFPAGGEGIYLAVDETGKFREDNFNTAMTVLQNAPEQGNLRGKKGGVKEGSDCFKLV
KMIMERNFAPVIIFSFSKKECEAYALQMSKLDFNLAEEKKLVDEVFQNAIGVLSEEDKQL
PQVVSVLPLLRRGIGIHHGGLLPIIKETIEILFGEGLVKALFATETFAMGLNMPARTVLF
TSVRKFDGHDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTSVVKNLVQGKADP
INSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPELCDRVRKYDKDLGEVFVP
RENEVESYFTIKQTIQNLQMERHVFITRPIYIMPFLQPGRLVYIKNNNDDFGWGVVLSYK
KQEDKKNPTEAPTITVDVILRVSEATAASKVVSEVKPAQAGEKSEPVIMAVALKCVQEVS
AVRLKLPSDLKPLDQRIMVIKMIQEAVKRVPESQFLLDPVKNMKIKEDVFLEIVNKLEKF
KTRLESHKLHRDPERDMLYEKYAKKMELKKELNNAELDLKKARSLLQMDELKCRKRVLRR
LGYATSQDVIERKGRVACELSAADELLITEMLFNGLFNNLSASQTCALLSTFVCDEKSSE
MPKLGEELSGPLRQMQDIARRIARVSHECKLEIDESNYVEQFKPFLMDIVYEWCNGSSFM
ELCKKTDIFEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFSEGIKLLKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctttggggatgacctgtttgattttgtggagaatgaaggggacacccaggtc
caggtcttaccagacacagaagaagtgagcacgtatgagagcgagaaagcagctgaggaa
cttaacctactacttgggaagcgaacaaatgaagatgattccaaaagtgagaaaaaaaac
aagaaactgcgctcacaggtggaggcagcggagtcagagctgaggttgacagaagaaatg
cccagaataagtatccacacaatagaatctgtggaggcctgcacacatgaagttgcagta
ccacctggtgaattgtatgtgcccctcaaacccccaaaagaaaaaccagcacggacatac
ccatttatactggatccttttcagaaagaagctatattatgcattgataataaccagtca
gtgttagtgtctgcccacacctctgcaggcaagacagttgtgggagagtatgcaatagca
atgtgtttacagaacaagcagagagttatatatacaactcctatcaaagctttgagtaac
cagaagtacagagacttttgtgatgagtttactgatgtgggattgctaacaggtgatgta
accatcaatcctaatgcttcttgccttatcatgacaactgaaattttacgttcaatgctg
tatcgaggttctgaggtgacaagagaggttggctgggttatctttgacgagatacactat
atgagagacaaggaacgaggttacgtttgggaggaaaccattattcttctccctcccact
gtgcatttcgtcttcctctcggctactattccaaatgcaagccagtttgcccaatggatc
tgccacttacaccatcagccctgccatgtagtgtatacagactaccgccccactccgctt
cagcactacattttcccagcaggaggagaaggtatatacttggctgtggatgagactggc
aagttcagggaggataatttcaacacagcaatgactgtcttgcagaatgcaccagaacag
ggaaatttgagggggaagaagggtggagtcaaagaaggctcagattgcttcaaactagtg
aaaatgatcatggaacgcaactttgctcctgttatcatttttagcttttcaaaaaaagaa
tgtgaggcttacgccctccagatgtcaaaactggacttcaatttagcagaagagaagaag
cttgtggatgaagtatttcagaatgccattggtgtgctgtcagaagaagacaaacagctt
cctcaagttgtctctgtgttgcctctcttgagaagaggaattggcatccaccatggaggt
ctcctgccaataataaaagaaacaattgagatcttgtttggtgaaggtttggtcaaagcc
ctctttgctactgagacttttgcaatgggtctgaacatgcctgccaggactgttcttttc
acctctgtccgcaagtttgatggccacgacttccgttggttgacatctggagagtacatt
cagatgtctggccgtgcaggtcgccgaggaaaggatgacaagggtattgtaatcatgatg
gtagatgagaagctcaacacatcagtggtcaaaaaccttgtgcagggtaaagctgatccc
ataaactctgcatttcatctgacctacaacatggtactgaatttgctgcgtgtggaacag
atcaatccagagtacatcttagaaagatccttcttccagtttcagaattattcatctatc
ccagagctgtgtgaccgtgtgagaaaatacgataaggatctaggggaagtttttgttcct
cgagagaatgaggtagagagttatttcacaatcaagcagacaatacagaatcttcaaatg
gaacgccatgtcttcataactcggcccatctacatcatgccattcttgcagcctggaagg
cttgtatatattaagaataacaatgatgactttggatggggagtagtactgagctacaag
aagcaagaagacaagaaaaatccaacagaagcgcccaccattactgttgatgtcattctc
cgggtctctgaggcaactgctgcttccaaggtggtgtctgaggtcaaacctgcccaagct
ggagagaagagtgagcctgtaataatggctgtggcactgaaatgtgtacaagaagtatca
gctgtaagactcaagctgccatctgacctcaaacctttggaccaacgaattatggtcata
aagatgattcaggaggctgtgaaaagagttcctgagagtcagtttctgcttgatcctgtg
aagaacatgaagataaaggaagatgtattcttagaaattgtcaacaagctagagaaattc
aaaactcggttagagtctcacaaacttcatagagatccagagcgagatatgctgtatgag
aaatatgcaaagaaaatggagctgaagaaagaactgaataatgcagagcttgacctgaaa
aaagctagaagtttgttacaaatggatgaactcaagtgtcggaagcgtgtgctgcgccgt
ctgggatatgccacttcccaagatgtgattgaacgcaagggtcgggtggcttgcgaactt
tctgctgctgatgaattgctgatcactgaaatgttattcaatggtctcttcaataattta
tcagcatcccaaacatgtgctttgttgagcacctttgtgtgtgatgaaaaaagttcagaa
atgccaaagctaggtgaagaactgtctggtcctctgagacaaatgcaggacattgcccgc
cgcattgcacgagtgagtcacgagtgcaagctggagattgatgagtccaattatgtagaa
caatttaagccattcttaatggatattgtttatgaatggtgcaatggttcatcattcatg
gagctctgcaaaaaaactgatatatttgaaggaagtatcatccgggccatgcgtcgtctt
gaggagctcttgaggcagatgattcaggctgctaaagccattgggatcgacctagagaac
aaattttcagaaggcattaaactgctgaagcgagacattgtgtttgctgcaagtttgtac
ttgtaa
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