Portunus trituberculatus (swimming crab): 123516077
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Entry
123516077 CDS
T07853
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ptru
Portunus trituberculatus (swimming crab)
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptru03036
]
123516077
Chromosome and associated proteins [BR:
ptru03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123516077
microRNA pathway
RISC loading complex
123516077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
ResIII
Helicase_C
PAZ
DEAD
Dicer_dsRBD
Dicer_platform
dsrm
Cas3-like_C_2
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
123516077
NCBI-ProteinID:
XP_045131059
LinkDB
All DBs
Position
40:8274003..8286622
Genome browser
AA seq
1495 aa
AA seq
DB search
MASLYSDEASSSTENKTADFRPRAYQLELYEHAKKQNSILVLGTGSGKTFISILLIKDLG
YQIRKSLKENRKWTVFVVNTVPLVYQQGHAIHKHTAFNVGMFERSRGVDIWTDEDWKEQL
NKNEVLVIVAQIFLDLILHSQMSLADVNLLILDECHHATGNHPMREIMRRYESLKAHKPE
LCPRVLGLTACVIHKKCKFDDVRNQIRELEKTMFSALTTSVDAQAVKKHTTAAKEVVICF
SPNEVSKYAENVQSQLIGIKSDIDEMENIDGKQKKVLKKKLDNISEIMDHLGDWSGARAV
KYEMDNFEETEDFEEIPAVRDLKKLLCQRLELIYNYCCNEEKKMFQPLNHTSEKVKRLCD
ILSVCRSDVCGLIFVERRNTAKLLYDFLLEAAKIYKELSFIKPAYVISANSRYSTDINLL
KNELKKQKETLLAFARGENNFLISTSVLEEGLDVRKCNAVIRFDKAMNFRSYVQSRGRAR
AIPAKYILMIEESDVDDLLSSVRLYREIETVLTNICINRELPTDLETSLHFAEDEIMPPY
EPFGTDGPRITFNSAICLINVYCGKLPQDKFTELVPETVYETSSEDEENRIIAGIKLPIN
ACLKETIYGSCMKNKDHAKKSAALALCKRLHEMKELDDRLRPVGKSEKDMLNGLIELPPE
EPTERGMPQPGTKKRRQIYNREMCQAFSVSKKRFKLYEIIVKSKPFNSNQVTIDSKDMNM
SVGFLCKETLRLPPFPLYSPKWNEVIVKIQLISESMDLDPITVNYVEHFHKVVFETLLDI
NPNLFDYFPQKTSLLILPLXWGLIDTLLLSDIASRETLRTFEAVNPPNRLFNFERSDFED
AIIYPLYLTASDEPMYYVTEIEDQMSPQDKFPDNYYSSYEDYFCSRYNLKISNKYQPLLT
VKHLPKDLNNLKMIVQRGKGKKKGQEPPKFMPELCGILPLKASLWWQIMMIPSVLHRLNS
LCLAEEMSNMMTSPDSPVIPRWQCNKTDNMDFDWLAKFIKEIVQHPGDNVSVILANAKPK
PIQPFMILNSLILQGSNDNFDLERLEVLGDSFIKYAVAEYLFLKYPLEHEGTLSQQRSRF
ISNKTLYSLGKLKNIPEKIQSIILNPKINGILPGFVLKPEIELHLQNIKAPSDTWAKYAN
VTEEQFKEEIKKMEDGGRKSCYNPWTQHEVSDKSVADSVEALIGISLLVGGRETAMNFLG
NLGMEIYNGTSFQCSLPVPSALLSKEEWANEEVLRYYDKYCLDRLEEKIQYTFRDKSFIV
QATTHSSFCQNKVTDCYQRLEFLGDAILDYLVTGMVFSSHVHCTPGQMSDLRSYYVKNET
LARAAVKKNLQCHLLYLAPKLQASIDKFISLFQNGLDDDDEIFTEDDAVDLEDVEVPKAL
GDLIEAIIGAVYLDSGKSLQRAWDVVQVLMGDIIEETMKKKDIPMNCVRKLYEMVPTGIR
FDKLPFQEDDGKAMYKLEIPGLPPLIRSGKNYDVAKIVAAKAGLRLLKEKEERGF
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctatacagtgatgaggcatcttcctctacagaaaataaaacggcagacttc
agaccaagagcttaccaactggaactctatgaacatgccaagaagcaaaattccattctt
gttctgggtacaggatcggggaagaccttcatctccatactgctcatcaaagaccttggg
taccagattaggaaatcattgaaagaaaatagaaaatggacagtgtttgtggttaacacg
gtccccttagtgtaccaacaaggacatgccatacacaaacacactgcattcaacgttggt
atgtttgaacgatcaagaggagttgacatttggacagatgaagattggaaagaacaactc
aacaaaaatgaagttcttgtaatagttgctcaaattttcctggatctcatactgcattct
cagatgtctttggcagatgttaatctgcttatccttgatgaatgtcatcatgctacaggg
aaccatcccatgcgtgaaattatgaggagatatgaaagtcttaaagcccacaaaccagag
ctctgtccaagagtacttggtcttactgcatgtgtaattcacaagaaatgtaagtttgat
gatgtgagaaatcaaatcagagaattggaaaaaacaatgttttctgcattaacaacttca
gtagatgctcaagcagtaaagaagcacaccactgcagccaaagaggttgtaatttgtttc
tctccaaatgaagtttcaaaatatgcagaaaatgttcagtcacaattaattggtattaag
agtgatattgatgaaatggaaaatattgatggcaaacaaaaaaaagttttgaaaaaaaag
ttagacaacataagtgagatcatggatcatttgggagactggagtggggccagagcagtc
aaatatgaaatggataattttgaagaaacggaagattttgaagaaatacctgctgttaga
gatttaaagaagcttctttgtcaaaggttggaattgatttataattattgttgtaatgag
gagaagaaaatgttccaaccattaaatcatacctctgaaaaagttaaaagattgtgtgat
atattgtcagtgtgtaggagtgatgtgtgtgggctaatctttgtagaaagaaggaacaca
gccaagttgttgtatgactttctcctggaagctgcaaagatttacaaagaactttctttc
attaagcctgcatatgttataagtgccaattctaggtattctactgatatcaatttactt
aagaatgaacttaagaagcaaaaggaaaccttgttggcatttgctagaggagagaataat
tttttaatttcaacaagtgttttagaagaaggtttagatgttagaaaatgcaatgcagtg
attcgctttgataaagcgatgaattttcgttcttacgtccagtccagagggagggcaaga
gctataccagcaaagtatatcctcatgattgaagaaagtgatgtagatgatctcctgtca
tctgttagattatatagagaaattgagactgttttaacaaatatctgcattaaccgagag
ttgcccacagacttggaaacaagccttcattttgcagaagatgagattatgcctccatac
gagccatttggcacagatggtcctagaatcacttttaattctgccatatgccttattaat
gtgtactgcggaaagctaccccaagacaaattcactgagttagtacctgaaactgtttat
gagacatcttctgaggatgaggaaaacagaattattgctggtatcaaattaccaataaat
gcatgtttgaaagaaaccatatatgggagttgcatgaaaaacaaggatcatgctaaaaag
agtgctgcattagcactctgtaaaagacttcatgagatgaaagaactagatgaccgcctc
cgtccagtaggaaaatcagaaaaagatatgttaaatggtcttatagagctgccaccagaa
gagcctacggagagaggcatgcctcagcctggcactaaaaagcgcaggcagatttataac
agagagatgtgtcaggccttttctgtctcaaaaaaacgtttcaagctgtatgagattatt
gtgaaatcaaaaccattcaactcaaatcaagtaacaattgattcaaaggatatgaatatg
tcagtgggcttcctttgcaaggagactctgagacttcctccattcccattatattcacca
aaatggaatgaggtaatagtcaaaattcagttgattagtgagtccatggaccttgatccc
ataacagttaattatgttgagcattttcacaaagttgtctttgagactttgcttgatatt
aatccaaatctgtttgattattttcctcaaaagacaagtctactgattttacctttgngt
tggggcctgattgatactcttctcctctcagacattgcttccagagagaccttaagaaca
tttgaggcagtgaatcctcctaacagattattcaactttgaaaggtctgattttgaggat
gccattatctaccctctctatttaactgcatctgatgaacccatgtactatgttacagaa
attgaggatcaaatgagtcctcaagataaattccctgataattattacagttcatatgaa
gactatttctgttcaagatacaatttaaagataagcaataaatatcagccattattaaca
gtaaaacatttgccaaaagatcttaataacttgaaaatgattgtgcaaagaggaaaaggg
aaaaagaaaggtcaagaaccccccaagtttatgccagagttatgtgggattttgcctctg
aaagcctctctatggtggcaaatcatgatgataccatctgtgcttcatcgtctcaatagc
ttatgtttggcagaagaaatgagcaacatgatgacttccccagactctcctgtgataccc
agatggcagtgtaacaagactgataacatggattttgattggttagccaagttcatcaag
gaaatagtgcagcatcctggagacaatgtatcagtaatcctagccaatgctaaacccaaa
cctattcagcccttcatgattctgaattcactcatactacaaggatcaaatgacaacttt
gacttagagagactggaagtgttgggagattccttcattaaatatgctgttgctgagtat
ctgtttttgaagtatcctttggagcacgaaggaacactttctcagcaacgtagccgcttt
attagcaacaaaactctatactccctaggaaaactgaaaaacataccagagaaaattcag
tctataatattgaatccaaaaatcaatggaatattaccaggatttgtcctgaaaccagaa
atagaacttcatcttcagaatattaaggctcccagtgatacatgggcaaaatatgctaat
gtgactgaagaacagttcaaagaggaaataaagaaaatggaagatggaggaagaaaatca
tgttacaatccctggacacaacatgaagtctctgacaagagtgtggcagacagtgttgag
gctctcattggtatctccctgcttgttggtggccgtgagactgccatgaattttctgggc
aacctgggcatggaaatttataatggcacttcatttcaatgtagtttacctgtaccatca
gctctactaagcaaagaggaatgggcaaatgaagaagtgctcaggtattatgataaatat
tgccttgaccgccttgaggaaaagatccagtatactttcagagataaaagctttattgta
caggctacaactcacagctctttctgccaaaacaaagtgactgattgctaccagagactt
gaatttttgggtgatgccatcttagattacttagtgacgggaatggtgttctccagccat
gttcattgcacacctggtcagatgtcagaccttaggtcatattatgttaaaaatgaaacc
ttggcgagagcagctgtcaagaagaatttgcagtgtcatttactgtaccttgcccccaag
ctccaggcctcaattgacaagtttatcagtcttttccaaaatggacttgatgatgatgat
gaaatcttcacagaagatgatgctgtggatttggaagatgtggaagtccccaaagctctg
ggagatctgatagaggccattatcggtgctgtctatctcgatagtggcaaatccttgcag
agagcatgggatgtggtgcaggtcctcatgggtgatataatagaagaaaccatgaagaag
aaagacatccccatgaattgtgttcgcaaactgtatgaaatggtgcccactggaattagg
tttgacaagttaccctttcaggaagatgatggcaaggcaatgtataagcttgaaattcct
ggcctgcctccattgatcagaagtggaaagaattatgatgtggccaagatagtggcagca
aaggcaggactccgtttgctaaaggaaaaagaagaaaggggcttttag
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integrated database retrieval system
