Portunus trituberculatus (swimming crab): 123516529
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Entry
123516529 CDS
T07853
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC123516529
KO
K15542
polyadenylation factor subunit 2
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123516529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123516529
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123516529
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_IFT140_1st
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SCAP
eIF2A
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_1st
Beta-prop_WDR11_2nd
PEP5_VPS11_N
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
123516529
NCBI-ProteinID:
XP_045131888
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All DBs
Position
41:13887403..13916407
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AA seq
959 aa
AA seq
DB search
MIQVGMFNVPPPPIPGKPLPPPGGGPQPFQPLSFKPFKTPDGEFDGKRLRKSVMRKTVDY
NCSVTNMLESRVWQRDERDRPALQADVCYASEMLPPTAHPLNPINAVVTKFVRTSTNKAK
CPIFCLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSSVRTMVWSHNDQWMVTG
DTGGFVKYWQTNMNNVKLFQAHKDPVRGLSFSPSDQKFATGSDDGTVRIWDFYRCYEKVL
RGHGADVKCVDWHPAKSLLASGSKDNQQPIKLWDPRSGQPLAKLHAHKSTVMDLKWNGNG
NWLCSASRDHLLKLFDIRNLSEEFQVFRGHKKEASCIAWHPHHEGLFASGGSDGSILFWH
VGNDKEVGAIESAHDGIIWDLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDKYNLNTL
PAGVLADDSMDIDDIPLNTSLTSQGVIPGMGPEDKVEEAESTGPETIPGLDFDSSAFDRF
SKKTPYAKPIPKTFQAAWNAAGGLEDEMEEENSATSWVVTDSAGLFSLPANLPGEMVYTD
DGDELPPGSVPLNTIRANSILYCGFLIPLNKIPGDVIQNAFSTMEEEEAVAEVTGDFEFA
RKLIKEKNQLINPNASTEEQPEKKAPAPPPPGFQQNQFNEPPNPQNFNNNPPNTTNTNTN
AFPNPAGFPGIPANFGMPAGAPRNFGATRGNFRGLPDAGFGRGGAQRGNWPIRGAPRGGG
PVAGGQRFPNEQFPQGFDNKDWSFENQNINRDNNLNNGGDMEDRGGGNQNWMRGWGGRGR
GRGGGFKDFEKHEEREQGNWGGMNNHWQNRGGMQGHGGDNQDGMSGGRGDHMGGNRGYGS
GDRNGSYGGGGNDRAGGGGDWHGDTNSWSGKAGGFGNKDDDYNSGRGGGWRGRGRPFRGG
GGGGDFQRGGWGGRGADFQRGRGRGDDYQQGRNWGGGPPHGGRGMMGNEGRSGGWDRFQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgatacaagtggggatgttcaatgtgcccccaccccccatcccagggaagccccttcca
ccacctggaggggggccacaacctttccagcccctctctttcaaaccgttcaaaactcct
gatggagaatttgatgggaagcgattgcgtaaaagtgtgatgcgaaagactgtggactac
aattgttctgtgacaaacatgcttgaaagtcgggtatggcagcgtgatgagagggaccgt
ccagccttacaggcagatgtgtgctatgcctcagaaatgttgccccctacagctcatcct
ttgaatcccataaacgcagttgtcactaagtttgtccgtacttctaccaacaaagccaag
tgcccaatcttttgtttagcgtggacgcccgagggacgccgcctggttactggtgcatca
tcaggggagttcactctgtggaatggccttaccttcaacttcgaaacaatattacaggct
catgacagcagtgtacggaccatggtgtggtctcacaatgaccaatggatggtgacaggg
gacacaggaggatttgtcaaatactggcagaccaacatgaacaatgtgaagctgttccag
gcacacaaggaccctgtgcgcggcctcagtttttccccaagtgaccagaagtttgccact
ggatctgatgatggaactgttaggatatgggacttttatcgctgttacgaaaaagttctg
cgaggtcatggagcagatgtgaagtgcgtggactggcaccccgcaaagagcctccttgca
tcgggcagcaaggacaaccaacaacccatcaaattatgggaccctcgctcaggacagcca
cttgccaaattgcatgctcataaaagcacagtgatggatttgaagtggaatggtaatgga
aattggctgtgctcagcatccagggatcatttattgaaactctttgatattcgtaactta
tcagaggagttccaggtgtttcgaggtcacaagaaagaagcttcgtgcattgcctggcat
cctcatcatgagggactgtttgctagtgggggttctgatggttctatattgttttggcat
gttggaaatgataaggaagtgggtgctattgaatcagcacatgatggcatcatttgggat
ctagcctggcatcccttaggtcacatcctttgttctggatccaatgatcatacctcaaag
ttctggaccagaaatcgtcctggggataaaatgagggacaagtataatctcaacactttg
ccagcaggagttcttgcagatgattccatggacatagatgatattccactgaatacaagt
ctgacctcccagggtgtaatccctggaatgggtcctgaagataaggtagaggaagcagaa
tccactggtccagaaaccattcctggtctagattttgactcctctgcttttgacagattt
tccaagaaaactccttatgcgaaaccaatccctaagaccttccaggcagcatggaatgca
gcaggaggcttggaggatgagatggaagaggagaacagtgctacaagctgggtagtgaca
gacagtgctggactcttcagcctaccagccaaccttcctggagaaatggtgtacactgat
gatggagatgaactgcctccaggatcagttcctctaaacaccattagagctaattccatt
ctttattgtggttttctgattcctctaaataaaataccaggggatgtaattcagaatgct
ttctctaccatggaagaagaagaagctgttgcagaagttacaggagattttgaatttgcc
aggaaactcataaaagaaaagaaccagcttatcaatccaaatgcaagcactgaggaacaa
ccagagaagaaggctccagctccaccaccaccaggcttccagcaaaatcaatttaatgag
ccaccaaatcctcaaaactttaataataatccacccaacaccaccaacacaaacaccaat
gcctttccaaacccagcaggcttcccaggaatcccagcaaactttgggatgcctgctggt
gctccccgcaactttggggccacacgagggaatttccgaggcctccctgatgcaggtttt
ggtcgaggtggtgcccaacgtggaaactggcccatcagaggggcacccagaggaggaggc
cctgttgcagggggacagagattccccaatgaacaatttccccaagggtttgataataag
gattggtcttttgagaatcagaatattaatagagataataatctaaacaatggaggggat
atggaggatagaggaggaggcaaccagaattggatgagaggctggggtggtcgaggccga
ggtcgaggaggcggcttcaaagacttcgagaaacatgaagagagggaacaagggaactgg
ggtggcatgaataaccattggcagaatagaggaggaatgcaaggccatggaggtgacaat
caagatggtatgtcaggtggtcggggagaccacatgggaggaaacagaggttatggcagt
ggggatcggaatggtagctatggtgggggtgggaatgatagagctggtggtgggggagac
tggcatggtgatactaattcttggagtgggaaagctggaggatttggtaataaagatgat
gactacaacagtggaaggggaggagggtggagagggagaggtcgtccattcaggggaggt
ggaggaggtggagacttccagcggggtggatggggaggaaggggggcagatttccaaaga
ggtagaggaagaggtgatgactatcaacaaggaagaaactgggggggtggtccacctcat
ggtggcaggggcatgatggggaatgaaggtcgaagtggtgggtgggacagattccagtag
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