Portunus trituberculatus (swimming crab): 123517541
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Entry
123517541 CDS
T07853
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123517541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptru03021
]
123517541
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123517541
Transcription machinery [BR:
ptru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123517541
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123517541
U7-dependent histone pre-mRNA processing factors
123517541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Tti2
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
123517541
NCBI-ProteinID:
XP_045133635
LinkDB
All DBs
Position
42:complement(2654904..2671527)
Genome browser
AA seq
1083 aa
AA seq
DB search
MSEQEPTVRERVVELLNTAAFLPSEKEKIATLAKVQELIIHLDPQLLDSFFEDVAAFQKD
RNSDVRKFVVGFIEEACKKDVAMLPRLVPNMQLLVMDEAVSVVKRVVQAVVQLHRATLAW
LAAARTTTPEMEQVWHIITTMKNTILTMIDHDNDGVRTQAIKFLEAMVLLQTYTEPDSVT
REGEFNLDHVPLTLKVARPRKLEEEAKMVLGKLLAFQGSIHISSVNLMTCMSSLTIIARA
RPQFLGKVVNALEILHANLPPTLTKSQVNSVRKHLKIQMINLLKHPASHDYHYNITTVLT
DLGMSSSEINKAMPSKDSMKRWIRRDKVGEEPVESAPKKPRIEKEEKKGKVEEPPAAVVE
KTSALDITQRWLVEKLIPENVANLVLVSMLNLPDEMPPLFSAGYSPITAAGTQTQIQHVA
RLLSSQLTAGGVGPGVEQVKDDEMKGGYDSDDESNISRLVGGRVQEESIQSGPVLVPAGL
AVRGARHKAKTMKLEEVTKPMNAAASAKMQQLLLQRLLKNHKTPLLGSGAKDCVRILTVL
MGSISPNECEELEDFLLEDMTNNCDLLFSWLFSEYATDHDFSQVNRFLGNAGKKDNEKQY
SDIMSSIVMKALAKEASKERDEFLSRLFLEAPHVPENLISSLVRCGSQGSDSVLAAANTL
KDISRWRPPASQPALEVLAMLATHEQETVRDQVIPILVELCEQETYMEIVSESATKFLKY
LLLEAPPEALCTHDLGRPIQPEEWTEASVKACLYLHLALLPLNQSMIHDLAQVYVKTVNE
AKRSILRLLEGPIRHMGMESPQLLKLVETCPKGGETLITRIIHILTEKAPPSEALVCRVR
ELYNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNPHVVKEVFNRLWGVTLDTGASPLT
PVDLLVALHLIDNDKCDVKTVIKATGLCFGERNIYTAEVLAFVLQQLMEQPSLPTLFMRT
VIQTLTHYPKLLGFIMNVLQRLISRQVWKQRKVWEGFIKCCQRAGAQSFTVLLQLPPPQL
ADVFSVAPDLRSRLLSHIATLTENQRAHIPPSLMDVIEGRVTTELSHPVPHPSEVPLPPA
PES
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacaggagcccacagtgcgcgagagggtggtggagctgctcaatacagcagct
tttctgccctcagagaaggaaaagatagccactctggccaaggtgcaggaactcatcatc
catcttgatccacagcttcttgattccttctttgaagatgttgcagcattccagaaagat
agaaattcagatgtacggaaatttgtagttggcttcatagaggaagcatgcaagaaagat
gtggcaatgcttccacggctggtgcccaacatgcagctgctggtgatggacgaggcagtg
tcggtggtgaaacgagtggtgcaagcagtggtccaactccaccgggctaccttggcctgg
ctggctgctgcacgcaccaccactccagagatggagcaggtgtggcacatcatcaccacc
atgaaaaacaccatccttaccatgattgatcatgacaatgatggtgtaagaacacaagct
atcaaattcctggaggcaatggtgctgctgcagacctataccgagccagactcagtgact
cgagaaggggaattcaacctggatcacgtgccactgacactgaaggtggcaaggcccagg
aaacttgaagaagaagcaaagatggtcctgggtaaactgctggctttccagggttccatt
cacatcagctcagtgaacctcatgacttgcatgtcctccctgaccatcattgcccgtgcc
cgacctcagtttctagggaaagtggttaatgccctggaaatcttacatgctaacctacca
cccacacttaccaagtctcaggtgaacagtgtaaggaaacatctgaagattcagatgatc
aacttattgaaacacccagcctctcatgattatcactacaacatcaccactgtcctcact
gacttgggcatgtcttcatcagagatcaataaggccatgccctcaaaggattctatgaag
aggtggattcgaagggacaaggttggagaagagccagttgagtcggctcccaaaaagcct
cggattgagaaggaagagaagaaaggcaaagtggaagagccacctgcagcagttgtggag
aagacctcagcacttgacataacgcagcgatggctggtagaaaaacttattccagaaaat
gtggctaatttggttctggtctccatgctaaatctgccagatgagatgccacctctgttc
agtgcaggatacagccccatcacagcagccggcactcagacacaaattcagcatgtggcc
cgcctgctgtcgtcccaactgacagcagggggagtgggcccaggggtggagcaagtcaaa
gatgacgagatgaagggtggttatgatagcgatgatgaaagcaacatctctcggctagtg
ggaggcagagtgcaggaggagtctatacagagtggtcctgttttggtgcctgctggtctt
gctgtgcgtggtgcaagacataaagccaagaccatgaagttggaagaagtcacgaaacca
atgaatgccgcagcaagtgccaaaatgcaacaacttctgctgcagcgtctgttgaaaaat
cacaaaactccattgcttgggtctggtgccaaggactgtgtcagaatactcactgttctc
atgggctccatatctcccaatgagtgtgaggaactagaagactttttgctggaggatatg
acgaacaactgtgacttgctcttctcgtggctgttctcggagtatgctaccgaccatgac
ttctcccaggtcaaccgtttcttgggcaatgcaggaaagaaggataatgagaagcagtac
tcagatatcatgtccagcatagtgatgaaggctttagctaaggaagcaagcaaggagaga
gatgagtttttatctcgtttgttcctggaagctcctcatgtgcctgagaatcttatctcc
tccttagtcagatgtggtagccaaggtagtgactccgtcctggctgcagccaatactttg
aaagatatatcacgatggcgaccacctgcctcacagcctgccttggaagtccttgccatg
ttagctacccatgagcaagaaacagtgcgtgatcaggtgatacctatactggtggagctg
tgtgagcaggagacttacatggagattgtgtctgaatcagctaccaagtttctcaaatat
ttacttctggaagcaccaccagaagctctgtgcactcacgacttggggcgtcccatccaa
cccgaggaatggacagaggcatcagtcaaggcctgcctatacttgcatctggctctttta
ccacttaatcagtcaatgatccatgatttggcacaagtgtatgtaaaaacagtaaatgaa
gccaagcgatcaatccttcgcctgttggaaggaccgatccgccacatgggcatggagtcc
ccacagctgctgaaattagtggagacttgccctaagggtggagagaccctcatcactcgc
atcattcatatcctcacagagaaagctcctcccagtgaagctctggtgtgtcgtgtgaga
gagctctacaatcgaagggtatcagatgtgcgctttctcattcctgttctgacggggctc
agtaagaaggaagtgattgcagtactgccgaaattaattaagctgaacccacatgttgtg
aaagaggtatttaatagattatggggagtaacactggatacaggagcttcaccacttaca
cctgttgacctgctggtggctcttcatctcattgataatgacaaatgcgatgtaaagact
gtcattaaagcaacaggcctgtgttttggagagaggaatatttacacagcagaagtattg
gcctttgtactacagcagctgatggaacaaccttccttaccaacactctttatgcgcact
gtcatccaaaccctcacgcattatcccaagctcctaggattcattatgaatgtgctccaa
cgtctcatatctcgtcaggtatggaagcaaaggaaagtatgggaaggtttcatcaagtgt
tgccaacgagcaggagcccagagcttcacagtattacttcagcttcccccaccccagctt
gctgatgtattctctgtggcacctgacttacgctctaggctcctctctcatattgcaact
cttactgaaaaccagagagcacacataccaccaagtcttatggatgtgattgaagggaga
gtaactactgagctttcccatccagttcctcatcccagtgaggttcctcttccacctgct
cctgagtcataa
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integrated database retrieval system
