Portunus trituberculatus (swimming crab): 123518711
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Entry
123518711 CDS
T07853
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptru03041
]
123518711
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123518711
Spliceosome [BR:
ptru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123518711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_N
AAA_22
AAA_19
Ank_2
Ank_5
ATPase
Ank
nSTAND3
Ank_3
T2SSE
FtsK_SpoIIIE
AAA_7
Motif
Other DBs
NCBI-GeneID:
123518711
NCBI-ProteinID:
XP_045135649
LinkDB
All DBs
Position
6:complement(6437649..6498781)
Genome browser
AA seq
1652 aa
AA seq
DB search
MNRRRGPNRRFNEAQVSEELKITIALALKKLTQNEDQKELELPSSLTSEERKYIHFLSQQ
MGFKSKSRGKGSSRYLTVYKKEGSTIMSKEALVTLADQTRSTILSLLHRCPVTNKERQDL
LSATERDRLMNPELRDLSVLRSLGRLTPGPPQVPPPAAPSEVAAEARKLPVWGMREQLLA
AVHHNQVILVCGETGSGKTTQVPQMLLQEASSLGKPCRIFCTQPRRLSALTIAERVAAER
GEKVGYTVGYQIRLESKLSPKTLLTFCTNGVLLRTLMGGDSSLASVTHILVDEVHERDRF
TDFLLIVLRDCLPKFRHLKLILMSAALDVNLYAKYFNNCPVIDIPGRCYPVKEFFLEDVL
RYTSYQTPEMAKAARELEKRQSGHKTATAWTQQMSQQILSNVSSPPPAHTPPRPTQGSAG
GPLSSASTPGQMSAVATQEMDNSLRREMDSCIQEAFLSGSDEAFSQMMYMVMSENVSPDY
QHSETWATPLMVAAGRGRVDVLEQLLALGASLTLRAANDWSAACWAKSTGQQEALDLLHA
YSACEGVDLLGVSGKSSPKGSGGRGGGVVGSVEVNTEDRRAVEAYHHSISDDVVDCDLLH
ALCLKIHTDQPPGAILIFLPGYDHIVTLRDKIITEERQYLQGGKYCLFCLHSSMQSSDQK
RVFRPSPTGVRKIILSTNIAETSVTINDVVYVVDSGKVKEVSYDSMVGVSCLRSVWISQA
SSQQRRGRAGRCQPGICYHLFSRSRYAALQLYQTPEILRTPLQELCLHTKLLAPANMPIA
DFLARAPEAPAFMVIRSAVQLLKSMDALDGWEDVTELGHHLLDLPLPPRLAKMVITATVL
KCLDPVLTIAAALALKDPFMLPKNPNEKRNASAVRRKFTSGTYSDHMVLLKAFQAWQKAC
TEGWERGWCERNYISGAAMEMIHGMRSQVLAQLRGAGFVRARGPGDIRDVNSNSDNWAMV
KAALVSGMYPNLIRVDRDQCQLRTQKESKVRLHPTSALLDVGGSVNTNMGTSLNTAHRSL
VASLXSDWLVYDEMVRIGVVAHVRTVTLVSPLTVLLMAGPMRLPLDALSEPSSRNSGDCS
SDSESEERPVGLSCLVRIDSWIQFLGDPQAAHLALQLRHKLHALVLRRLRAPNKPLTQTD
EDVVRVVGAALSQEEQALNMVQPAGVGQRPRPLYPHSHPHEGGWSVGTSDDSQSSHSSSR
RTSDAATPPAPQHTPTPKFPQQTASKLPQSPTTNTNANTLMSPGFNQTSAQSAPKIGSGA
SGGKFGVPFGGNKAPGGSSAPPPPANKGMVGGMGIGGNKLGNKDMKGMYRNNNNNHNSTT
TSTTLNNNKSNTTTGATNSSTEGGSGGGGASAVGASCSGTSGGMAGSKTRYFIIKASLYK
QLEASHHTSLWAFTHNTEKKILQAWQGGQATVLLIFTLHRGGQFNGYARFLAQRTDEKCP
EITNVGPTLGPLYKVEWVKKWNVGFHHTRRLYNPYNDNLQVHLSRDGQEVEPGIGEQLIR
LWERGPGGGGGSFNKTSNNSYMNSGSGGGSGSGGGGSGGNIGSGSGNSSSGAGGGGSGSN
NSTSGSGGGGGGGGGGVIHDPPGSNQNRHPIHPPHMNQVHHPPFHHPPFNRNYGNGYNYN
GGGGGGGGGGGGSGGGGGGGGYRGNYRGGYRR
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggaggcgcggtcctaaccgtcggttcaatgaggcgcaggtcagtgaggagctg
aagatcaccattgcactcgccctcaagaagctcacacagaatgaagaccagaaagagctg
gagttgccgtcctctctcacatcggaggagaggaagtacattcactttctctcccagcag
atggggttcaagagcaaaagcagaggcaagggatcatctcggtacctgacggtgtacaag
aaggagggctccaccatcatgagcaaggaggcactggttaccctggcagatcagactcgc
tccaccatcctctccctcctccaccgctgccccgtcaccaacaaggagcggcaggatctt
ctctccgccaccgagcgcgaccgactgatgaaccccgagttgcgtgatctcagtgtgctc
aggtcactagggcggctgacccccggcccaccacaggtacccccgccagctgccccaagt
gaggtggcagcggaggcgaggaagctgccggtgtgggggatgcgggagcagctgctggcg
gccgtgcaccacaaccaggtcatcttggtgtgtggtgagacaggatccggcaagaccact
caggtgccacagatgctgctgcaagaggcgtcatcactgggcaagccgtgtcggatattc
tgcacacaaccacgccgcctgtccgccctcaccattgcagagagggtggcggccgagcgt
ggggagaaggtcggctacactgttggatatcagatacgtctcgaaagcaagctctccccc
aagactcttctcacattctgcaccaatggagtcttgctgcggacactgatgggcggcgac
tcctccctggccagcgtgacccacattctagtggacgaggtgcatgagagggacaggttc
acagacttcctcctcatcgttctccgtgactgcctaccaaaattccggcacctcaagctg
atactcatgtctgccgcccttgacgtcaacctctacgccaagtacttcaacaactgcccc
gtcattgatattcctggccgctgttatcccgtcaaggagttctttttggaggatgtgctg
agatacactagttaccagaccccagagatggccaaagcagcaagggagctagagaaaagg
cagagtggacacaagacagccacagcatggacacagcaaatgtcacagcagattctgagt
aatgtctcctcgccaccaccggcacacacaccaccccggcccacacaaggctctgcgggg
gggcccttgtcatctgcctccactccaggccagatgtcagctgttgctacacaagagatg
gacaacagtctgcggcgagagatggacagctgcatacaagaagcgttcctcagcggctca
gatgaagccttctcccagatgatgtatatggtgatgtcagaaaatgtgtctccagattac
cagcactcagagacatgggccactccccttatggtggccgcagggcggggccgagtggat
gtcctagagcagctgctggcccttggtgcgtccctcaccctgcgggccgccaatgactgg
tcagctgcctgctgggccaagtcgacaggccagcaggaggctctcgacctgctccatgcc
tacagtgcatgtgagggagtggatctgcttggagtgagtgggaagagcagcccaaagggg
agtggagggcgtggtggtggagtggtggggagtgtggaggtgaacacagaggacaggcgg
gccgtggaggcgtaccaccactccatctctgacgacgtggtggactgtgacctgctccac
gcactgtgcctcaagatccacactgatcagccacctggtgccattctgatcttcctgccg
gggtacgaccacatcgtcacactgagggacaagatcatcactgaggagagacagtacctg
cagggggggaagtactgcctcttctgcctccactccagcatgcagtccagcgaccagaag
agagtcttccgcccttccccgacaggcgttcgcaagatcattctctccaccaacatcgct
gagacaagtgtgacgatcaatgacgttgtgtatgtggttgacagcggcaaggtgaaggag
gtgagctacgactcgatggtgggtgtgtcgtgcctacggtcagtgtggatatctcaagcc
tccagccagcagaggaggggacgtgccggtcgctgtcagcccggcatctgctatcacctc
ttctctaggagtcgatatgcagcattgcagctctaccagactccagagattctgcgcact
cctctccaggagctgtgccttcacaccaagctcctcgccccggccaacatgcccatcgca
gacttcctggcacgtgcccctgaagcgccggcattcatggtgatccgtagtgccgttcag
ctcctgaagagcatggacgcactggatgggtgggaggacgtcacagagctgggccaccac
ctgttggacctgccactaccaccacgcttggccaaaatggtcattaccgccacagtgctg
aagtgccttgacccggtgctcaccattgctgcagcactcgccctcaaagacccattcatg
ctgcccaagaaccccaatgagaagagaaatgccagtgctgtgcgtcggaagttcacctct
gggacttacagcgatcacatggtgctgctcaaggcattccaggcgtggcagaaggcatgc
actgaagggtgggagcgtgggtggtgtgagaggaactacatctccggggctgccatggag
atgatacatggcatgcggtcacaggtcctggctcagctgaggggagctggttttgtgagg
gcgcggggacctggtgacattagggacgtgaacagcaacagtgacaactgggcaatggtg
aaagcagcgctggtgtccggtatgtaccccaacctcatacgtgtggaccgagaccaatgc
cagctgcgcacacagaaagaaagcaaagtacgtctccaccccacctcggcactcctggat
gtgggtgggtcagtgaacaccaacatgggcacctccctgaacacagctcaccgctccctg
gtggcgtcgctgncctcagactggctggtgtacgatgagatggtgcgcattggggtggtg
gctcacgtgcgcaccgtcaccctggtgtctcccctgacagtgcttctcatggctggccct
atgcgtctcccccttgatgccctgtctgagccctctagccggaatagtggtgactgcagc
agcgacagtgagagtgaggagcgtcctgtgggtttgtcctgcctggtgcggatagacagc
tggatacagttccttggagacccacaagcagcccacctcgccttgcagctcaggcacaaa
ctccacgcacttgtcctccgccggctgagagcacccaataagcccttgacacagacagat
gaggatgtggtgcgggtggtgggagcagcgctgagtcaggaggagcaggctctcaacatg
gtacagccggcaggggtggggcaacggccacgccctctctacccacacagccatccacac
gaaggtggctggtcagttggtacctcagacgactcacaatccagccactcatcctccaga
agaaccagtgatgctgcaactcccccagcaccccagcacaccccaacacccaagttcccc
cagcagactgcctccaagctcccccagtcacccaccaccaacaccaacgccaatactctc
atgtcacctggatttaaccaaacgtcagcccagtctgctcccaaaattggttctggggcg
tcaggagggaaatttggtgtgccctttggtggtaataaggctccgggtgggtcctctgct
cctccaccccccgccaacaagggtatggtggggggaatgggtattggagggaacaagctg
gggaataaggatatgaaaggaatgtaccgtaacaacaacaacaaccacaacagcaccacc
accagcaccacacttaacaacaacaagagtaacaccaccaccggtgccactaactccagc
actgagggtggcagtggtggtgggggagcgagtgctgtgggtgccagctgctctggcacc
tcggggggcatggcggggagcaagacgaggtacttcatcatcaaggcatctctgtacaag
cagctggaggcgtcgcaccacacatctctctgggccttcacccacaacactgagaagaag
atactgcaggcctggcagggtggccaggcgacggtgctgctgatcttcactcttcatcgg
ggtggccagttcaatggctatgctcgcttcctggctcagcgtactgatgagaagtgccca
gagatcaccaacgttggcccgactcttggcccactgtacaaggtggagtgggtcaagaag
tggaatgttggcttccaccacacacggcgactctacaacccctacaacgacaacctgcaa
gtccacctcagcagggatggccaggaggtggagcccggcattggggagcagcttatccgc
ctgtgggaaagaggaccaggtggaggtggaggaagtttcaataaaacctccaataactcc
tacatgaactctggaagtggaggaggcagtggaagtggtggtggtggcagtggaggaaac
attggaagtggtagtggtaatagtagcagtggtgctggtggtggtggaagtgggagtaat
aatagcacaagtgggagtggaggtggtggtggtggtggcggaggtggagttattcatgat
ccaccaggctccaatcagaacagacacccaatccacccaccacacatgaaccaggtccac
cacccgcccttccaccaccctccattcaaccgcaactatggaaatggctacaattacaat
ggtggaggtggtggaggaggaggcggtggtggtggcagtggaggaggtggtggtggtgga
gggtacagagggaattacaggggagggtacaggaggtag
DBGET
integrated database retrieval system
