Portunus trituberculatus (swimming crab): 123519356
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Entry
123519356 CDS
T07853
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptru
Portunus trituberculatus (swimming crab)
Pathway
ptru03013
Nucleocytoplasmic transport
ptru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123519356
03015 mRNA surveillance pathway
123519356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptru03019
]
123519356
Enzymes [BR:
ptru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123519356
5.6.2.5 RNA 5'-3' helicase
123519356
Messenger RNA biogenesis [BR:
ptru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123519356
mRNA cycle factors
Common to processing body (P body) and stress granule
123519356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
AAA_32
AAA_7
PhoH
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
123519356
NCBI-ProteinID:
XP_045136549
LinkDB
All DBs
Position
45:complement(6560396..6577320)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEEPDLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPSHSQV
TVNGDVEAEVEKVTETLGELQFEEEEDENAFYTKELPEWACRYCGIHDPASAVMCNVCHK
WFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKAE
SVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQI
NKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLKE
SQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVIK
IPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYIY
HRLLGHVEIDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVGA
GDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPWP
QADKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQR
AYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLSDPRRLN
VALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRLV
NAANPGSHFMTTAMYDAREAMVPGSMYDRSGPINGTTPQPSPYFRGPPYDMYGRAHDTLD
YISTEHSQPGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAARGGRVGGIGMRGNRAGSRK
QTKNMGGAGAPQLSQPFSQDPSMQSYSQPGLTQGHLSQGMSGPGLSGLSQGLSQAELSQD
SYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttacggccccagttctcagagtctgaccttctatgacactgaggag
cctgaccttctgggggctgacacgcaggggtctgagtatgagttcaacttgaccctcggc
agccagacccagacccagggtgacccgctagacaagacccagccctcccacagccaggtt
actgtcaatggagatgtagaagcagaggtggaaaaagtgacagagacccttggagaactg
caatttgaagaggaggaagatgaaaatgccttctataccaaggagctccctgagtgggcc
tgccggtactgtggcatccatgacccggcctcggctgtcatgtgcaatgtgtgccacaag
tggttctgcaatggccgcggcaacacctccggctctcacatcatcaaccacctggtgcgc
gccaagcacaaggaggtgagtcttcacaaggatggcctggtgcgggacactgtgctggag
tgctatgcttgtgctgtcaaaaatgtctttgtgctgggcttcatccctgccaaggctgag
tctgtggtggtgctgctgtgccgccagccatgtgctgcccaaagctctcttagggacatg
aattgggatcccgagcagtggaaacctctgatcaacgaccgtgcactgctgccttggctg
gtgcgtgtcccctccgaggctgagcagttgcgtgcccgccagataacagcacagcaaatc
aacaagctagaggaattgtggaaggagaatgcctcagccacctttgatgacctggagagg
cctggtgtggatgaggagccccagcaagtgtgtctcaggtacgaggatggtttccagtac
caaaacatctttggtccgctggtgaagttggaagcagattatgacaagaagctgaaggaa
tcccagactcaagacaagatagaagtgcgctgggatattggcctcaacaagaagatctgt
gcttacttcactcttgccaaaactgatggagatatgcggctgatgcatggggatgagctg
cggctgaggtacctgggagacctgcataaaccctggtctggggtggggcatgtcatcaag
atccctgacaactttggggaggaggtgggcatagagctgaaatccaatgttggagtgccc
acagactgccgggacaagttcgtggttgactttgtgtggaagtcaaccagctttgatagg
atgcaggctgccctacgcaagtttgctgttgatgactcctctgtatcaccttacatatac
catcgtttgctgggtcatgtggagatcgatgaactcatcttccgtcatattcaccttccc
aagcagctgtctgctcccaatctgccaaccctcaataattcccagcaatatgccctgaag
catgccttgcagcgacctctgtctctcatccaaggtcccccaggcacaggcaagacggtg
acctcagccaccattgtataccagctggtgaagcagacaggtggctctgtactggtgtgt
gccccttccaatactgctgtcgatcaactcacagagaaaatccacaagactggcctgaag
gtggtgcggctgtgtgccaagtctcgtgaagccattgactctcctgtctccttccttgct
cttcataatcagatccgtaatctagaggataatggtgagcttcaaaagttgcagcagcta
aaggaggaaactggtgagctctcatctgctgatgagaaacgctatcgtatgctcaagaaa
caggctgagaagaccctgttggaggctgctgatgtcatctgctgcacatgtgtaggtgct
ggagatcccaggttggcccgccttaaattccactccatcctcattgatgaatctatgcag
gccaccgaaccagagtgcatggtgccagtggtgttgggtgccaagcaagtaattctggta
ggagaccactgccagctagggccagtggtgatgtgcaagaaggcctctcgtgcagggctt
tcacagtccctattcgagcgtctggttgttctgggcattcgacctttccgtcttactgtc
cagtatcgtatgcatcctcagctggcacaattcccttcaaacttcttttatgaaggttcc
cttcagaatggtgtggctgatgctgatcgcaccatgaagggtgttagcttcccctggccc
caagcagacaagccacagttcttctatgtcacatctggccaagaggagattgctggttca
ggaacatcctacctgaatcgcactgaagcttccagtgtggagaagttggttactcgcttc
ctcaactcgggggtgaaaccagagcagattggagttatcaccccatatgagggccagagg
gcttacctggtccagtacatgcagtaccagggacctctcaaccagaagctgtaccaacgt
ctggaggtagccagtgtggatgcattccagggccgtgagaaagatctcatcattatgtct
tgtgtgcgatctaatgaacatcagggcatcggcttcctctctgaccctcgtcgtctcaat
gtggcgctgacccgagctcgttatggcatcatcattgttggcaatcctaaagtgctttcc
aagcaaggactatggaaccatttgctgcatcacttcaaggagaagaaggtgttggttgaa
ggacccctcaacaaccttaaggagtctatgatgcagttcagcaagcccaagcgtttggtt
aatgctgccaatccaggctctcactttatgaccactgctatgtatgacgctcgcgaggcc
atggtacccggctctatgtatgatcgctctggccccattaatggtacaacaccacaaccc
tcaccctacttcagaggtccaccctatgacatgtatggccgtgcccatgacaccctggat
tacatctctactgagcactctcaacctggcctcagcaacttaccagtccctgtggggatg
ttcatgaatatggcccatgtcccacctcgcttctaccaacagcaccagcaggctctagca
gctcgaggtggtcgtgtgggaggtattggaatgcgtggtaacagggctggctcgaggaaa
cagaccaagaacatgggtggggcaggtgctccacagctctctcagcctttcagtcaggat
ccttccatgcaaagctactcccagccaggactcacccagggtcacctctcacagggcatg
tctggtcctggcctaagtgggctgtctcagggattgtctcaggccgagctatcccaagac
tcctacatggtggatcagttccagagtcagaccgatggccttctctctcaagactccact
taccagggcgaccgtgcgttcttcaccccagcatcacaaacgcaccacttctcacagcca
tactga
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