Paraburkholderia terricola: CUJ90_04780
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Entry
CUJ90_04780 CDS
T05812
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pts
Paraburkholderia terricola
Pathway
pts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ90_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pts03019
]
CUJ90_04780
Enzymes [BR:
pts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUJ90_04780
Messenger RNA biogenesis [BR:
pts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUJ90_04780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
HEM4
Fe-ADH
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
AXE91760
LinkDB
All DBs
Position
mHS1_A:1081965..1083428
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AA seq
487 aa
AA seq
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MSDTAVTPSTATFDQFGLAPDILKAVKESGYTIPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAV
VFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVFEVP
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLEVQRLTVDTPVRHHHEERAPRRERSEVRDERGGRRRSGAP
SGSFDRPHHHRVQPVDDFFLKPYEPSPASVRKIEEADAASAAPQKTSAKQPLAALLGGFG
MPRKSSS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacgcccagcactgcgacttttgatcaattcggcctcgcgccc
gacatcctgaaagccgtcaaggaatcgggctacaccattcccacgccgattcaggcgcag
gcgattcccgtcgtgctggccggccgcgacgtaatgggcgccgcgcagaccggcaccggc
aagaccgcgagcttctcgctgccgatcatccagcgtctgttgccgcaggccagcacgagc
gcatcgcccgcccgccatccggtgcgcgcgctgatcctcacgccgacccgcgaactggcc
gaccaggtcgccgcgaacgtgcagtcctacgcgaagcacaccgcgctgcgcagcgccgtg
gtgttcggcggggtcgatatgaatccccagtcggagcaactgcgccgcggcgtggaaatt
ctgatcgccacgccgggccgtctgctcgatcacgtgcagcagaaaaccgccaacctgggc
caggtgcagatcctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccg
gatttgcagcgcatcctgaacctgctgccgaaagaacgtcaaacgctgctgttttcggcc
acgttctcgggcgagatcaagaagctcgcggcaacctatctgcgcgatccgcagacgatc
gaagtcgcgcgcagcaactcgaccgcgaccaacgtcacgcaaatcgtgttcgaggttccc
gagggcgacaagaccggcgcggtcgttcaattgattcgcgagcgcagcctgaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgcagcctcgaacgcgac
ggcgtgatcgcgaccgcgattcacggcgaccgctcgcaaaacgagcgcatgcaggcgctg
gacgcgttcaagcgcggcgaaattgaagcgttggtcgccaccgacgtggcggcgcgcggt
ctcgacatcgcggaactgcccgcggtgatcaatttcgatttgccgttcaatgcggaagac
tatgtgcatcggatcggccgtaccggccgggccggcgcttccggcgacgcgttgtcgctg
tgcagcccgaacgagcgcaagcagcttgccgatatcgagaagctcatcaagcggccgctg
gaagtgcaacgcctgaccgtggatacgccggtgcggcatcaccacgaagagcgcgcgccg
cgccgtgagcgcagcgaggttcgtgacgagcgcggcggccgccggcgttcgggcgctccg
tcgggctcgttcgatcggccgcatcaccatcgcgtgcagcctgtggacgatttcttcctc
aagccgtatgagccgtcgcccgcttcggttcgcaagatcgaggaggccgatgcggcttcc
gccgctccgcagaagacgtctgcgaagcagccgctggctgcgttgctgggcggcttcggc
atgcccaggaagtcgtcgtcctga
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