Paraburkholderia terricola: CUJ90_06260
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Entry
CUJ90_06260 CDS
T05812
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pts
Paraburkholderia terricola
Pathway
pts03410
Base excision repair
pts03430
Mismatch repair
pts03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CUJ90_06260 (recJ)
03430 Mismatch repair
CUJ90_06260 (recJ)
03440 Homologous recombination
CUJ90_06260 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pts03400
]
CUJ90_06260 (recJ)
DNA repair and recombination proteins [BR:
pts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CUJ90_06260 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CUJ90_06260 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CUJ90_06260 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AXE92001
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All DBs
Position
mHS1_A:complement(1403905..1405611)
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AA seq
568 aa
AA seq
DB search
MTRIVTRASSPVDAEILIRHGLHPVLARLYAARGVCMPDEIETGLARLVAPAGLKGCEDA
AALLADAIEGKRRMLVVADYDCDGATACAVAVRGLRMFGGRIDYLVPNRFEYGYGLTPEI
VALAARNASGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPN
QPGCTFPSKCIAGVGVMFYVLLALRAELRRRGAFNDLHPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWDLAQQLDTMNRERREIEAGMQQQALDDLSTIDPDGATTITLFN
PAWHQGVIGIVAGRLKEKFHRPSFTFALADDSGQLVKGSGRSIAGFHLRDALDLISKREP
GLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTIETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPVFSGEFDIASQALVKDKHLKLQLVRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgactcgaatcgttacgcgcgcctcgtctcccgtcgacgccgaaattctcatccgtcac
ggcctgcatccggtactcgcgcgcctgtacgccgcgcgcggcgtgtgcatgcccgacgaa
atcgaaaccggtctcgcgcgcctcgtggcgcccgccggactcaagggctgcgaggacgcc
gccgcgctgctcgccgacgcgatcgagggcaagcgccgcatgctggtggtcgccgactac
gactgcgacggcgccaccgcgtgcgcggtcgcggtgcgcggcctgcgcatgttcggcggc
cggatcgactatctggtgccgaaccgcttcgaatacggttacggcctcacgcccgagatc
gtcgcgctggccgcgaggaacgcgtccggcaagccggatctgctgatcacggtcgacaac
ggcatcgccagcgtcgacggcgtggaggcggccaacgcgctcggcatcgacgtgctcgtc
accgatcaccatctgcccggcgacgaactgcccgcagcccgcgcgatcgtcaatccgaat
cagccgggctgcacgtttccgagcaagtgcatcgcgggcgtcggcgtgatgttttacgtg
ctgctggcgttgcgcgccgaattgcgccgccgcggcgcgttcaacgacctgcatcccgag
ccgcgtctggacggcctgctcgatctggtcgcgctcggcacggtcgcggacgtcgtcaag
ctcgacggcaataaccgcgtgctggtcgcgcaaggcttgcagcgcatccgcaaaggcaag
atgcagccgggcatcgccgccctctttcgcgccgccgcgcgcgacgcgcgcagcgcgtcg
ggtttcgatctgggctttgcgctcggcccgcggctgaatgcggccggccgtctgtccgac
atgtcgctcggcatcgaatgcctgaccaccgacgacatcggccgcgcatgggacctcgcg
cagcaactggacacgatgaaccgcgaacgccgcgagatcgaggccggcatgcagcagcag
gcgctcgacgatctttccacgatcgaccccgacggcgcgaccaccatcacgctgttcaat
ccggcgtggcaccagggcgtgatcggcatcgtcgccgggcgcctgaaggagaagttccac
cgcccctcgttcacgttcgcgctcgccgacgacagcggccagctcgtcaagggctcgggc
cgttcgatcgcgggctttcatctgcgcgacgcgctcgatctgatctcgaagcgcgagccc
ggcctgatcgtcaagttcggcggccacgcgatggccgcgggcctgacgctcgccgccgcc
gacgtgccgcgtttcaccgccgcgttcgaggcggtcggccgcgaatggctctccgaggag
gcgctgtcgcgcaccatcgagaccgacggcgaactcgaggacgcctacttcacgccgcaa
ttcgtcgaaatgctcgacgccgccgtgtggggccagggcttcccggcgccggtgttttcc
ggcgaattcgacatcgcgtcccaggcgctggtgaaggacaagcatctgaagctgcaactc
gtgcgcggccgccagcgcttcaacgcgatctggttcaaccacaccgacacgctgcccgcg
cgcaccaccgtcgcctatcgcctcgcgagcgacacatggaacggcgtgtcgcgggtgcaa
ttgatcgtcgagcacgcggcaagctag
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