Paraburkholderia terricola: CUJ90_16785
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Entry
CUJ90_16785 CDS
T05812
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pts
Paraburkholderia terricola
Pathway
pts03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pts00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CUJ90_16785 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pts03021
]
CUJ90_16785 (rpoC)
03400 DNA repair and recombination proteins [BR:
pts03400
]
CUJ90_16785 (rpoC)
Enzymes [BR:
pts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CUJ90_16785 (rpoC)
Transcription machinery [BR:
pts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CUJ90_16785 (rpoC)
DNA repair and recombination proteins [BR:
pts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CUJ90_16785 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AXE93798
UniProt:
A0A1M6YLT1
LinkDB
All DBs
Position
mHS1_A:complement(3717859..3722097)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
SDRERFDQIAAEESFEFGTPETPAAEQHHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaaccagaagtttttgacgcgatc
aagatcggtctggcctcgcccgacaaaatccgttcgtggtcgttcggtgaagtgaagaag
ccggaaaccatcaactaccggacgttcaagccggagcgtgatggtctgttctgcgcgaag
attttcgggccgatcaaagactacgaatgcctttgtggcaagtacaagcgcctgaagcat
cgtggcgtgatttgcgaaaagtgcggcgtcgaagtgacgctcgccaaggtgcgtcgcgaa
cggatgggccacattgagttggcctcgccggttgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctatgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
accgaagaggattactacaacaaggtcgaagagtacggcgacgagttccgcgccgaaatg
ggcgcggaaggcgtgcgcgaactgctgcgcgcgatcaacatcgacgagcaggtcgagatg
ctgcgcaccgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggctttccagcgttcgggcatcaagcccgactggatggtgctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggacggcggccgcttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggtcgccgcggtaaggcgatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggccgtttccgtcaa
aacctgctcggtaagcgcgtggactactccggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcaccagtgcggcctgccgaagctgatggcgctcgaactgttcaagcctttc
atcttcaacaagctcgaggtgatgggtgtcgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgtgcgcctacgctgcaccgcctcggcattcaggctttcgagccggtg
ctgatcgaaggcaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctggaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtcctgttcccggccaatggcgatccgtcgatc
gtgccgtcgcaggatatcgtgcttggcctgtactacgcgacgcgtgaagcggtgaatgcg
aagggcgaaggcctgacgttcaccggcgtctcggaagcactgcgtgcctacgagaacaag
gaagtcgagctcgcctcgcgcgtcaacgtgcggatcacggaaatggtccacaacgaagac
aagtcggaaggtgcgccggcgttcgtgccgaagatcacgctgtatccgaccaccgtcggc
cgcgcaatcctgtcggagattcttccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacaccgcattccgcaagtgcggtctgcgt
gaaacggtgattttcgccgaccagttgatgcagtcgggtttccgtctggcaacgcgcgcg
ggtatctccatctgcgtcgacgacatgctcgtgccgccgcagaaggaaaccatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacgtcg
caagagcgctacaacaacgtcgtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggaacagctgtcgacggaaccggtggtcgatcgcgacggcaacgaaacgcgt
caggagtcgttcaattccatctacatgatggccgactccggtgctcgcggttcggcggtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gagacgccgatcacggcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggcgcacgtaagggtctggctgatacggcactgaagacggcaaactcgggttac
ctgacgcgtcgtctcgtggacgtgacgcaggatctggtcgtggtcgaggacgactgcggt
acgtccaacggcgttgccatgaaggcgttggtcgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcggtcgcgtgacggtggctgacgtcgtcaatccggaatcgcaggaa
acgctgtacgaaacgggcacgctgctcgacgaagatgcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgtacgccgctgacttgcgaaacgcgttacggtctgtgc
gcagcctgctacggccgcgacctgggccgaggctcgtcggtcaacgtcggtgaggcagtc
ggcgtgatcgccgcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggtgcggcgtcgcgtgcagcggtggcttcgtcgatcgaagcgaagtcgaac
ggtacggtgcgcttcacggcaacgatgcgctacgtcaccaacgcgaagggcgagcagatc
gtcatttcgcgttccggcgaagcgatgatcaccgacgaccacggccgcgagcgcgaacgt
cacaaggtgccgtacggcgcgacgctgttgcaactggacggcgcgcagatcaaggccggc
acgcaactggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggcacg
gtgaagttcgaaaacgtcgaggaaggcgtgacggttgccaagcagatcgacgatgtgacg
ggtctctcgacgctggtcgtgatcgacgtgaagcgccgcggttcgcaagcgtcgaagacg
gtgcgtccgcaggtcaagctgctcgatgcgaacggcgaagaagtcaagatcccgaacacc
gagcactcggtgcaaatcggcttccaggtcggcgcgctgatcaccgtgaaggacgggcag
caagtgcaggtcggcgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attaccggcggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaagacgca
ggtatcctggcggaagtcacgggtacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaggtcgtcaacaagggcgaaatgatcgtggacgggccg
gcggatccgcacgacatcctgcgtttgcagggcgtcgaagcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtttgcaaggcgtgaagatcaacgacaagcacattgaa
gtgattgttcgtcagatgctgcgccgtgtgcagatcacggacaacggcgatacgcgtttc
atcccgggcgaacaggtcgagcggtcggacatgctcgacgagaacgaccgtatgatcgcg
gaagacaagcgtccggcaacgtacgaaaacgtgctgctcggtatcacgaaggcctcgttg
tcgaccgattcgttcatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgatgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcacgcaagagcaaggaactg
tccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggccgccgaacagcaccactccggcgagtaa
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integrated database retrieval system
