Photorhabdus thracensis: VY86_02535
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Entry
VY86_02535 CDS
T03944
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ptt
Photorhabdus thracensis
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_02535
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VY86_02535
Archaeal homologous recombinant proteins
VY86_02535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
cobW
AAA_21
ABC_tran
SMC_N
NTPase_1
AAA_22
AAA_16
AAA_25
GTP_EFTU
RsgA_GTPase
AAA
Motif
Other DBs
NCBI-ProteinID:
AKH62380
UniProt:
A0A0F7LI66
LinkDB
All DBs
Position
628086..631772
Genome browser
AA seq
1228 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTTEPFASSGLFAITGPTGAGKTTLLDAICLALYHETPR
LTVSASQNELMTRHTAESLAEVEFEVKGVAYRAFWSQRRARNQPDGNLQAPKVELAFSSN
GKILADKIQDKKEKIIEITGLDYGRFTKSMLLSQGDFAAFLNAQPNERADLLEELTGTEI
YGILSQQIYQQHKEAQSELGILQAKASAIDLLTEGQHQQYLEQQQQLADSESRLNQQIKT
LQHSEQWLIREEELQQFATENQVVLQQAENALTHAEPQLQKLADSEPAETLRPLLDDKNR
TQYEHQRISKQLEDMRQQLQQQQQTLTPIQQKVTDTDSARATHQQHRQQQEKLISEQVIP
LDHQIDGQIKDLNLTQQQISEQKTALENSCQQYDTANQRSQSLTNQRKQLENYFEQQTYH
QYFGEKIAFWQHQFSWRQDQQQQINHQNQKIDKLNAEITQLSDNLNKQEADLKQQIENNQ
PLKLAFEQAEQQFFHLQKQYSPEKLQKQLAEYQEQLPRQHKLEILSPQILQLQTTIASNR
VRLQQPEKLLKELPVQIGAIDKQLSDKQQHLADLSQRIQLEQKIVSLEKERAQLKEGVPC
PLCGSEHHPAIQAYQKIELSKSEQRLKDLRQEFEELQTTRISLVNKNEFQQQQYNHILQE
ITDAEPKLNSLIQQWQQTCETLQTEISPSDKPALEIFVQQNQSAYQLCLAQLAKFELTEK
EHQKTEKVLTVHKEQIKKIEQSIELDKQQYNALTKYLAELQPEIQQQQNKLADVIEKMTS
ELQEYDLSLPILNDAENWLQQRRNEWQVYQNCRENWQQIQKEQAVIQNQLESLSKQKEEY
TSRLNIFNQKEQQQKQQLAETQQQRQKLFGEQSVAKMTQALQQQSQLLEEKYKQALSHLQ
QAQSSISQLTGAIHEIEKNSKQAEQQKQQSEQNFNSALAESIFTDQSTFEAALLSPEQRK
ELQQLKERLEQQQIQVKALCQKAAEALQQHLKNRPELLSQQTKSQLTEQLKSTTDELKRN
TLQQGELRNLLGNDAVRRQQQKSLLEEINHCQQNYDDWSYLNNLIGSADGAKFRRFAQGL
TLDHLVHLANQRLRKLHGRYYLQRKNSDGLELQVVDTWQADAIRDTKTLSGGESFLVSLA
LALALSDLVSNKTCIDSLFLDEGFGTLDPETLDIALDALDHLNASGKTIGVISHVEAMKE
RIPVQIKVKKVNGLGISKLSPEFRYNKQ
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctgagtctgcgactgaaaaacattaattcattacaaggtgaatggaagatt
gatttcacaacagagccgtttgccagcagtggcctattcgcaataaccggccctaccggt
gcgggtaaaaccacattattggatgccatctgccttgccctttatcacgaaacaccgcgc
ctgacagtttcagcatcacaaaatgagctgatgacccgccacacagcagaatccctagct
gaagttgagtttgaagtgaaaggtgttgcttaccgcgctttctggagccaacggcgagcg
cgcaaccagccggacggcaatctgcaagccccaaaagtggaactcgcattcagcagcaac
ggcaaaattctggcagataagatccaagataagaaagagaaaattatcgaaattaccgga
ttggattacggtcgtttcaccaaatccatgctgttatcccaaggagacttcgctgctttt
ctcaatgctcaacccaatgaacgggctgatttattagaagaattaaccggtactgaaatt
tacggtattttatcccaacaaatttaccagcaacataaagaagcccagtcagaactgggt
attctgcaagccaaagcctctgccattgatttgttaacggaaggacagcatcaacaatat
ctcgagcaacagcaacaactcgcggattctgaatcacgactgaatcaacaaataaaaacc
ctgcaacattcggagcaatggctgatccgtgaggaagaacttcaacaatttgctactgaa
aatcaggttgttttacaacaggcagaaaacgcacttacccacgcagaaccgcaactgcaa
aaactggccgacagtgaaccagccgaaacgcttcgcccattgctggatgacaaaaatcga
actcaatatgagcatcagagaatcagtaagcagttggaagatatgcgccaacaacttcaa
cagcagcagcaaacactcacgccgatacaacaaaaagtgactgataccgactctgccaga
gcaacacatcaacaacaccggcagcaacaagaaaaactgatatcagaacaggtgatccca
ttggatcatcagattgatggtcagattaaagatcttaatcttactcagcaacaaatcagc
gaacagaaaacagcgcttgaaaacagttgccagcaatatgacacggcaaaccaacgctcc
cagtcattaaccaaccaaagaaaacaactggaaaactatttcgaacagcagacttaccat
caatatttcggtgaaaaaattgctttctggcaacaccaattctcctggcggcaagatcag
cagcaacaaattaatcaccaaaatcaaaaaattgacaagctcaatgccgaaatcacacaa
cttagcgataacctgaataaacaagaagcagacctaaaacaacagattgaaaataaccaa
ccattaaaactggcatttgaacaggcagagcagcaattttttcatctgcaaaagcaatat
tcaccagagaaattacaaaaacaattagctgaatatcaggaacaactgccgcggcaacat
aaactggaaatactgtccccgcaaatcctgcaattacaaaccacaattgccagtaatcgt
gttcgtttacaacaaccggaaaaattattaaaggaacttcctgttcaaattggcgctatt
gataaacaactctcagacaaacagcaacatttagcagatctttctcaacgcattcagtta
gaacaaaaaattgttagtctggaaaaagagcgcgcgcaactcaaagaaggtgttccttgt
ccactttgcggttctgaacatcacccggctattcaagcttatcaaaagattgaattgtca
aaatcagagcaacggctaaaagatttacgtcaggaatttgaagaactgcaaactaccaga
atatcgttagtgaataaaaacgagtttcaacagcaacaatacaaccatattttgcaagaa
attactgacgctgaaccaaaattgaattcattaattcaacaatggcagcaaacttgcgaa
acattacaaactgaaatttctccttcagataaaccggcacttgaaatatttgtacagcag
aaccaatcggcttatcagctttgtctggcccaattagctaaatttgaactgacagaaaaa
gaacatcaaaaaacagaaaaagtactaacagttcataaagaacagattaaaaaaattgag
caaagcattgagctggataaacaacaatacaatgccctaacaaaatacctcgctgaactg
caaccagagatacagcaacaacagaataagctggctgatgttattgaaaaaatgacttct
gaattacaggaatatgatttatcactgccaattctgaatgatgctgaaaactggctgcaa
caacgtagaaatgagtggcaggtatatcaaaactgccgtgaaaactggcaacaaatccaa
aaagaacaagctgttattcaaaatcagcttgaatcattgagtaaacaaaaagaagaatac
acatcccgtttaaacatatttaatcaaaaagagcaacaacagaaacagcaactcgcagag
acgcaacaacagcgccaaaaactatttggtgaacagtcggtcgcgaaaatgactcaggca
ttacagcaacaatctcagctgttggaagaaaaatacaaacaggcactgtcacatctgcaa
caagcacaatccagtatcagccagcttaccggcgcaattcatgagattgaaaaaaacagc
aaacaagctgaacaacaaaaacagcagtcagaacaaaatttcaactctgcattagctgaa
agtatatttaccgatcaaagtacctttgaagcagccctattatcaccagagcaacgtaag
gagctgcaacaactcaaagaacggctcgaacaacaacagatacaagtcaaagccttgtgt
caaaaagcagcagaagccctgcaacaacatctgaaaaatcgccctgaattactttctcaa
cagacaaaatcacaactgactgaacagttgaaaagcaccactgatgagctgaaaagaaac
accttacaacaaggagaattaagaaacctgcttggtaatgacgcagtacgccgccaacaa
caaaaatccttgctggaagagatcaaccattgccaacaaaattatgatgactggagttac
ctgaataacctgattggttcagcagatggcgctaaattccgccgttttgcccaaggacta
acactggatcatctggttcatcttgccaatcaacggctgagaaaacttcacggacgctat
tatttacaacgcaaaaacagtgatggtcttgaactgcaagtcgttgatacctggcaagcc
gatgccattcgtgataccaaaacgctttccggtggtgaaagttttctggtcagcctcgct
ctggctttagctttatctgatttagtcagcaataaaacctgtattgattcactattcctg
gatgaaggctttggcacacttgacccagaaactcttgatattgcactcgacgctctggac
catctgaatgcttccgggaaaactattggtgttataagccacgtcgaagccatgaaagaa
cggatcccagtacagattaaagttaaaaaagttaatggacttggaataagtaaactctca
cctgagtttcgttataataaacaatag
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