Photorhabdus thracensis: VY86_05910
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Entry
VY86_05910 CDS
T03944
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VY86_05910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptt03021
]
VY86_05910
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_05910
Enzymes [BR:
ptt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VY86_05910
Transcription machinery [BR:
ptt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VY86_05910
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VY86_05910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
AKH62932
UniProt:
A0A0F7LM90
LinkDB
All DBs
Position
complement(1481557..1485777)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRISEEVRDGEGNITTSTGLVDTTIGRAILWMIVPRGLPYSLVNQPLGKKA
ISRMLNTCYRVMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIMEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVSRNTLLNEKWCDLLEESSVDSIKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGSLKL
FNAKSVTNSAGKLVITSRNTELCLIDEFGRTKESYKVPYGAVLGKGDGEAVNGGETVANW
DPHTMPVVSEVSGIIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLDDGVSISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVSGIVSFGKETKGKRRLVISPLDGGDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIENAGSSEFLEGEQVEYARVKVANRKLEQEGKVPAIYGRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQLNESSE
APQVSVDEATANLAELLNAGFGGDKK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcaccagatatgatccgctcgtggtcattcggtgaagtgaaaaag
ccggaaacgattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcccgt
attttcgggccggtaaaagactatgagtgcttgtgtggtaaatacaagcgcttaaaacac
cgtggtgtgatttgtgagaagtgtggcgtagaagttacccagactaaagttcgtcgtgag
cgtatgggtcacatcgagctggcttctccaacggcacacatttggttcctgaaatcattg
ccatcccgcatcggtttgttgctggatatgccactgcgtgatattgagcgcgtactgtac
ttcgaatcctatgtggttgtagaaggcggtatgaccagcttggagcgcagtcaaatcctg
acagaagaacaatatctggatgcactggaagagttcggtgatgaatttgatgcgaagatg
ggtgcggaagctatccagtctttgctaaaaaatctcgatctggaaaatgagtgtgaaact
ctgcgtgaagagttaaatgaaactaactctgaaactaaacgtaagaagttgaccaagcgt
attaagctgttggaagcctttattcagtccggtaacaagcccgaatggatggttctgacc
gttctgccagttctgccacctgatttacgtccactggttccattggatggcggccgtttt
gcaacgtcggatctgaacgatctgtatcgtcgtgttattaaccgtaacaaccgtttgaaa
cgcctgctggatctggctgcgccggatatcatcgttcgcaacgaaaaacgtatgttgcag
gaagcagtcgatgctctgttagataacggtcgtcgcggtcgtgcaattaccggttctaac
aaacgtcctctgaaatccctggctgacatgatcaagggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttctgtcatcaccgtaggcccttac
ctgcgtctgcatcagtgtggtctgcctaagaagatggcgctggaactgttcaagccattc
atctatggcaagctggaactgcgtggtttagcgactacgattaaagcagccaaaaagatg
gttgagcgtgaagaggcggtggtatgggatatcctggatgaagtgattcgtgaacacccg
gttctgctgaaccgtgcaccaacacttcaccgtttgggtattcaggcattcgaaccggtt
ctgatcgaaggtaaagcgattcagttgcacccattggtgtgtgcggcatataacgccgac
ttcgacggtgaccagatggctgttcacgtaccgctgactctggaagcccagctggaagcg
cgtgcattgatgatgtcgaccaacaacatcctgtctcctgcaagtggtgagccgattatc
gtgccatctcaggacgttgttctgggtctgtattacatgactcgtgactgtgttaacgct
aaaggcgaaggcatggtgctgaccgggcctaaagaagcagaacgcgtataccgcgcaggt
ctggcttctctgcatgcccgtgttaaagttcgtatctcagaagaagtgagagatggcgag
ggtaatatcaccaccagcacgggtctggttgatacgactattggtcgggcaatcctgtgg
atgatcgtcccaagaggtctgccttactctttggttaaccagccactgggtaaaaaagct
atctccagaatgctcaatacttgctaccgtgtgatgggcctgaagccaacggttatcttc
gctgaccagatcatgtacaccggttttgcctacgctgcacgttcaggtgcatctgttggt
attgatgacatggttatcccagagaaaaaagctgggatcattatggaagcagaagcagaa
gttgctgaaattcaggaacagttccaatctggtctggtaacagctggcgaacgttataac
aaggttatcgatatctgggccgcagcaaacgagcgtgttgctaaggcgatgatggaaaac
ctgtccactgagacagtcattaaccgtaacggcgaagaggaacaacaagtctctttcaac
agcatctttatgatggctgattccggtgcgcgtggttctgccgctcagatccgtcagttg
gcggggatgcgtggcctgatggctaaaccagacggttccattatcgaaacaccaatcacc
gcgaacttccgtgaaggcttgaacgtactccagtacttcatctcaacccacggtgcccgt
aaaggtttggcggataccgcattgaaaacggcgaactctggttatctgacccgtcgtctg
gttgacgtggcacaggatctggttgttacagaagacgactgtggtacgcacgaaggtatt
ctgatgacgccggttattgaaggtggtgatgttaaagagccactgcgtgagcgtgtactg
ggtcgtgtaacggcagaagatgttctgaagccgggtacggctgacattctggtttcacgt
aacaccttgctgaacgagaaatggtgtgatctgttagaagagagctctgttgacagcatt
aaagtacgttccgttgtaagttgtgaaactgactttggtgtttgtgcgaactgttatggc
cgtgaccttgcccgcggacacatcatcaataaaggcgaagctgttggtgttattgcagcg
caatcaatcggggagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcggaatctagcattcaggttcgtaacaaaggtagcctgaaactg
tttaacgcgaaatccgttaccaactccgcaggtaagctggtgattacttcccgtaacacc
gaactgtgcctgatcgacgaatttggccgtactaaagaaagctataaagtgccttacggt
gcggtattgggtaaaggtgatggcgaagcagttaacggcggcgaaaccgttgctaactgg
gatccacataccatgccagtagtcagtgaagtatccggtatcatccgtttcgctgacatg
gtagatggccagaccattacccgtcagacggatgagttgacaggtctgtcttcactggtt
gttctggatagtgcagagcgtaccggtagtggtaaagacttgcgtccggcactgaaaatc
gttgatgccaagggtgacgatgtattgatcccaggtactgatatgcctgctcaatatttc
ctgccaggcaaagcaattgttcagttagacgatggtgtcagcatctctgcgggtgatacg
ttagcgcgtattcctcaggaatccggcggtacgaaagatattaccggtggtctgccacgc
gtagccgacctgttcgaagcgcgtcgtccgaaagagcctgcaatcctggccgaagtcagt
ggtatcgtctcctttggtaaagaaaccaagggcaaacgccgtctggttatctccccatta
gatggtggtgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtattcgaa
ggtgaagttgttgagcgcggtgatgtgatctccgatggtccagagtctccacatgacatc
ttgcgtttgcgtggcgttcatgcggttacccgttacatcaccaacgaagttcaggaagtt
taccgcctgcaaggggttaagattaacgataaacacattgaggttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaaatgcaggtagttctgaattcctggaaggcgaacaggtt
gaatatgcccgcgttaaagtggcaaaccgtaagctggaacaggagggtaaagtccctgca
atttatggacgtgatctgttgggtatcactaaagcgtctctggcaactgaatccttcatc
tctgcggcatcgttccaggaaacgacccgcgtgctgactgaggctgcggttgcgggtaaa
cgtgatgaactgcgtggcttgaaagaaaacgtcatcgttggtcgtctgatcccagcgggt
acgggttatgcttaccatcaggatcgtatgcgtcgtcgtcagttgaatgagtcttctgaa
gcaccacaagtgagtgtagatgaagcaactgcaaacctggcagaactattgaatgccggt
tttggcggcgataagaagtaa
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