Photorhabdus thracensis: VY86_05915
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Entry
VY86_05915 CDS
T03944
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VY86_05915 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptt03021
]
VY86_05915 (rpoB)
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_05915 (rpoB)
Enzymes [BR:
ptt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VY86_05915 (rpoB)
Transcription machinery [BR:
ptt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VY86_05915 (rpoB)
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VY86_05915 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKH62933
UniProt:
A0A0F7LLK6
LinkDB
All DBs
Position
complement(1485908..1489936)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQ
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYSTENILNLFFSKTVFEIRDNKLQMT
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDEVNRIEVPVEYIAGKVVARD
YIDVNTGEIICAANMELSLDLLARLSQAGHKSIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSREEVEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNYGESSLFNREQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLRQAKKDL
TEELRIFEAGLFARIRSVLISGGIEAEKLDKLPRERWLELGLADEEKQNQLEQLAEQYDE
LKTEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYDLGDETRQKVDLNTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLK
LGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gttttggatgtaccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatccagaaggccagaatggtttagaagcggcattccgttctgtattcccaattcag
agctacagtggcagttcggagctgcaatacgttagctaccgtcttggtgagccagtgttt
gatgttaaagagtgccagattcgtggtgtcacttattctgcacctctgcgcgttaaactg
cgtctggtcatctatgaacgtgaagcaccggaaggcacggtcaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgacaacggtacttttgttatcaatggt
actgagagggttattgtctcccagttacatcgtagtcctggtgtattctttgacagcgat
aagggtaaaactcactcatccggtaaagtgctgtataacgcacgtattatcccttaccgt
ggttcttggttagatttcgaattcgatccaaaagataacctgtttgtacgtattgaccgt
cgccgtaaattgccggcaacgattattctgcgtgcaatggattacagcactgaaaacatc
ctgaatctgttcttcagtaagactgttttcgaaattcgtgacaacaaactccagatgaca
ctggtgccagagcgtctgcgtggtgaaacggcttcttttgatattgaagcaaacggcaaa
gtttatgttgaaaaaggccgtcgtattaccgcacgtcatatccgccagttagaaaaagac
gaagtgaaccgtattgaggttccggttgaatacatcgcgggtaaagttgttgcaagagat
tacattgatgtcaacacaggtgaaattatctgtgcggctaacatggaactctctttggat
ctgctggcacgtttgagccaggctggtcataaatctatcgaaaccctgtttaccaacgac
ttggatcacggtgcatatatctccgagactcttcgtgttgacccaaccaatgatcgtttg
agcgctttggttgagatttatcgcatgatgcgtcctggtgagccgccaacgcgtgaagca
gcagaaaatctgtttgaaaatctgttcttctcagaagatcgttatgatctttctgcggtt
ggccgtatgaaattcaaccgttcgctaagccgtgaagaagttgaaggctctggtatcctg
agtaaagatgacatcattgatgttatgaagaaactcattgatatccgtaacggtaaaggc
gaagtcgacgatattgaccacttaggcaaccgtcgtatccgctctgtgggtgaaatggcg
gaaaaccaattccgtgttggtctggtacgtgttgagcgtgcggttaaagagcgtctgtct
ctgggtgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttcagcc
gcggtgaaagaattctttggttccagccagctgtctcagtttatggaccaaaacaacccg
ctttctgaaatcactcacaagcgccgtatttctgcattaggcccaggtggtttgacccgt
gagcgtgcgggcttcgaagtgcgtgacgtacatccaactcactatggccgtgtatgtcca
attgaaaccccggaaggtccgaacatcggtctgattaactcattgtctgtttatgcgcag
actaacgagtatggtttccttgaaaccccataccgtctggttcgtgatggtgttgtaact
gatgaaattcattacttgtctgcgattgaagaaggtaacttcgttatcgcacaggcaaac
accgtattggacgatgaaggtcacttcgttgaagatttgataacctgccgtaactatggc
gaatccagtttattcaaccgtgaacaggttgaatatatggacgtttccactcaacaggtg
gtttccgtcggtgcttccttgatcccattcctggaacacgatgacgcaaaccgtgcattg
atgggtgcaaacatgcaacgtcaggctgttcctacactgcgcgctgacaagccgctggta
ggtacaggtatggaacgtgctgtagcggttgactcaggtgtaacttccgttgctaaacgt
ggcggcgtggttcagtacgttgatgcatcccgtatcgttatcaaagtaaacgaagacgaa
atgtatccgggtgaagcaggtatcgatatctataacctgactaaatacacccgttctaac
cagaacacctgcattaaccaaatgccatgtgtttctctgggcgaacccgtagaacgcggt
gacgtactggctgacggtccatccactgacttgggtgaattggcgttaggtcagaacatg
cgcgtagcgttcatgccgtggaatggttataactttgaggactccatcctagtttctgag
cgtgtcgttcaggaagatcgctttacaaccattcatatccaggaactggcttgtgtgtct
cgtgataccaaattagggcctgaagagatcacagctgacattcctaacgtgggtgaagct
gcactctccaaactggatgaatccggtattgtttatattggtgcagaagttaccggcggt
gacattctggtgggtaaagtgacacctaaaggtgaaactcagctgacgccggaagaaaaa
ctgctgcgtgctatcttcggtgaaaaagcgtctgatgttaaagactcttctctgcgcgta
ccaaatggcgtatccggtacggttatcgatgtacaggtatttacccgcgacggcgtcgaa
aaagataagcgtgctctggaaatcgaagagatgcaactgcgtcaggctaagaaagacctg
acagaagagttgcgaatctttgaagctggcttgtttgcccgtatccgttctgtcctgatt
tctggcggcatcgaagctgagaaattggataagctgcctcgtgagcgttggttagaactg
ggtctggctgatgaagaaaaacagaatcagttggaacagttggctgaacagtatgacgaa
ctgaaaactgagttcgagaaaaaactggacgctaaacgtcgtaagatcactcagggtgat
gacttagcaccgggtgtgctgaaaatcgttaaagtttatctggcggttaagcgtcagatt
cagcctggtgataagatggcgggtcgccacggtaacaagggtgttatctccaagatcaat
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagatatcgtactgaaccca
ctgggcgtaccatcacgtatgaacattggtcagatcctggaaactcacctggggatggct
gcgaaaggtattggtgacaagattaacgcgatgctgaaacagcagcaggaagtcgccaaa
ctgcgtgaatttatccagaaagcttatgacctgggtgatgaaacccgtcagaaagttgat
ctgaacactttctctgatgaagaagttatgcgtctggcagaaaacctgaaaaaaggtatg
ccaattgcaacaccagtatttgatggtgcgaaagagaaagaaattaaagagctgctgaaa
ctgggtgacttgccgacttctgggcaaattactctgtttgatggtcgtactggtgagcaa
ttcgaacgtcaggttacagttggctacatgtatatgctgaaactgaatcacctggtggat
gacaaaatgcatgctcgttcaactggttcgtacagcctggttactcagcaaccgttgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcattggaagca
tatggtgccgcgtacaccttgcaggaaatgctcaccgtcaagtccgacgatgttaacggc
cgtaccaagatgtataaaaacatcgtggatggcaaccaccagatggaaccaggaatgccg
gaatccttcaacgtactgttgaaagagatccgctctctgggtattaacatcgagctggaa
gacgaataa
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