Photorhabdus thracensis: VY86_06425
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Entry
VY86_06425 CDS
T03944
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VY86_06425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptt03019
]
VY86_06425
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_06425
Enzymes [BR:
ptt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VY86_06425
Messenger RNA biogenesis [BR:
ptt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VY86_06425
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VY86_06425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AKH63017
UniProt:
A0A0F7LMI9
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All DBs
Position
complement(1588188..1590014)
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AA seq
608 aa
AA seq
DB search
MSTAEVINTISLAEQVLRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIP
ALVQEGLTLVVSPLISLMKDQVDQLRANGVAADCLNSTQAREEQMDVIRRCRQGMIKLLY
IAPERLMMDNFLEQLLEWRPAMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIAL
TATADETTRNDIARLLNLDNPLIHISSFDRPNIRYTLIEKYKPLDQLWLFIRGQKGKSGI
IYCNSRNKVEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKTADTQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGESQQTACGNCDICLDPPKNYDGLVDAQKAL
SCVYRVGQRFGIGYIVEVLRGANNQRIRDIRHDRLPVYGIGKDQSQEHWVSVLRQLIHLG
FISQNIANYSALQLTEAARPVLRGEVPLKLAVPRIQNLKGRSQQSKSYSGDYDRKLFAKL
RKLRKSIADEDNIPPFVVFNDVTLIEMSEQCPVTAEEMLLINGVGQRKLERFGSVFMALI
CKHLEECE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaccgcagaagtcatcaatacgatatcactggcagagcaagtattgcgggaaacc
tttggttatcagcaattccgtcctggtcagcaacaagtcatcaataccattcttgagggg
cgtgattgtctggtcattatgccgacgggtggtggcaaatcattgtgttaccaaattccg
gcactggtgcaggaaggattaaccttggttgtttctcccttgatctctttaatgaaagat
caggtggatcaactaagggcgaatggtgtcgcggctgattgtctgaattcaactcaggcc
cgtgaagagcagatggatgtgatccggcgttgccgtcagggcatgatcaaattgctgtat
atcgctcctgaacgcttaatgatggataacttccttgaacagcttttggaatggcgacct
gctatgttggctgtggatgaagcccattgtatttcacaatggggccatgatttccggcct
gaataccgggcgctgggacagctcaggcaacgctttccaacattacctgtcattgcgttg
acggcgaccgctgatgaaactacccgcaatgatattgcccggttactgaatctcgataat
ccgcttattcatatcagcagttttgatcgccccaatatccgttataccttgatagaaaaa
tacaagccattagatcaattatggttatttatccgtggtcagaaaggtaaaagcggcatc
atttactgcaatagccgcaataaagttgaagagatatctgaacgtttacaaaaacgtggc
ttgagtgttgcaccataccatgccgggttagataatagccaacgcgcccgggtacaggat
gcatttcaacgtgatgatttacaggttgtggtagcgaccgtggcatttggcatgggtatt
aataaacccaatgttcggttcgtggttcactttaatattccacgtaatatcgaatcctat
tatcaggaaacagggcgtgccggacgtgatggtttacctgcggaagcggtgctgttctat
gatccggctgatatggtatggcttcgccgctgtctggaagagaaaaccgctgacacacag
caagatattgaacgacataagcttaatgcgatgggagcctttgccgaagcgcaaacttgc
cgccgcctagtgttattgaactattttggtgaaagccaacaaaccgcctgcggcaactgt
gacatctgccttgatccaccgaaaaattatgatggcttggtggatgcacaaaaagcgctc
tcctgtgtttaccgggttggtcagcgttttggtatcggttatattgttgaagtgctcaga
ggcgcgaataatcagcgtatccgcgatataaggcatgatcgtttaccggtttacggcatt
ggtaaagatcaaagccaggagcactgggttagcgtgttgaggcagcttattcacttaggc
tttatcagtcaaaacattgccaattattcagcattacaattaacagaagctgcgcggcca
gtattacgtggtgaagttccgctgaaactggctgttccacggatacagaacctgaaaggg
cgtagccagcaaagtaaatcatatagtggcgattatgatcgcaaattgtttgccaagctg
cgtaaattacggaaatctattgctgacgaagataatatcccgccttttgttgtatttaac
gatgttacgctgattgaaatgtcagagcaatgcccggttacggctgaagaaatgttatta
atcaacggggtaggacaacgaaaactagaacgttttggtagcgtttttatggctttgatc
tgtaaacatctggaggagtgtgaatag
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