Photorhabdus thracensis: VY86_06475
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Entry
VY86_06475 CDS
T03944
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt00300
Lysine biosynthesis
ptt00470
D-Amino acid metabolism
ptt01100
Metabolic pathways
ptt01110
Biosynthesis of secondary metabolites
ptt01120
Microbial metabolism in diverse environments
ptt01230
Biosynthesis of amino acids
Module
ptt_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
VY86_06475 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VY86_06475 (dapF)
Enzymes [BR:
ptt01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
VY86_06475 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
AKH63027
UniProt:
A0A0F7LMJ2
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Position
complement(1598687..1599511)
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLVVEAPYDPDLDFHY
RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE
PEFEPHLVPFRALKAEKTYILRVVERTVLCGVISMGNPHCVIQVADVETAEVEILGPALE
SHERFPERANIGFMQILNRGHICLRVYERGVGETQACGSGACAAVAVGIQQQLLDSHVQV
DLPGGSLFICWEGPGKPLYMTGPATHVYDGTIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctccaaaatgcatggtcttggtaatgactttatggtcgttgatgctgtgacc
caaaatgtttatttctcaccagaactgatctgccgtttggctgacaggcatactggtgtg
ggcttcgatcagctgttagttgttgaagcaccttatgatccggatttggattttcactat
cgcatttttaatgctgatggcagtgaagtggcacagtgtggcaatggggcgcgttgtttt
gcccgttttgtccgccttaagggattgattaataagcgtgatattaaagttagtactcag
tcgggacgtatggtattgagtattaccaatgatgatcaggtttgcgtgaatatgggggaa
cctgaatttgagccacatcttgtgccatttcgcgcgttaaaggcagaaaaaacctatatt
ttaagagtggtagaaagaacggttctttgtggtgtgatttccatggggaatcctcattgt
gtgattcaggtggcagatgtggaaactgctgaagtggaaattctggggccagctctggaa
agccatgaaagatttcctgaacgggctaatattggtttcatgcaaattttaaaccgtggt
catatttgcttacgggtttatgaacgtggtgttggggaaactcaggcttgtggcagtggt
gcttgtgcagcggtagccgtcggcattcaacagcaactgctcgacagtcatgttcaggta
gacttgccgggaggttcactgtttatctgttgggaagggccgggcaaacctctctatatg
actgggccggcgacgcatgtttatgatggcacaattcatctgtaa
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