Photorhabdus thracensis: VY86_10375
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Entry
VY86_10375 CDS
T03944
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VY86_10375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptt03019
]
VY86_10375
03016 Transfer RNA biogenesis [BR:
ptt03016
]
VY86_10375
Enzymes [BR:
ptt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VY86_10375
Messenger RNA biogenesis [BR:
ptt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VY86_10375
Transfer RNA biogenesis [BR:
ptt03016
]
Prokaryotic type
tRNA degradation factors
VY86_10375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
S1_RRP5
OB_RRP5_4th
KH_2
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
AKH63680
UniProt:
A0A0F7LM54
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All DBs
Position
2400643..2402772
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AA seq
709 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIVATVVSV
NPQINPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS
GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQ
ALHDRVAELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLEQDETLEEAEIHEILGSL
EKHVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSCEGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA
INSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAISRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVADYLQVGQEVSVKVLEIDRQGRVRLSIKEATAGTAVEEAPPAPQSAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgattgttcgtaaatttcaatatggtcaacataccgttactatcgaaacg
ggtatgatggcgcgccaagccacagctgctgtcatggtcaatatggatgacactgctgta
ttcgtcactgttgttggtcagaaaaaagtaaaagctggtcaggattttttcccgctgacg
gttaactatcaggagcgtacttacgccgcaggccgtatcccaggcagcttcttccgtcgt
gaaggccgcccaggagaaggcgaaacgttggtagcccgtttgattgatcgccctctgcgt
cctctgtttccggaaggtttcctgaacgaaattcagattgtagcgactgtggtttctgtc
aatccacaaattaacccggatatcgttgcaatgattggcgcttctgctgcgctggcattg
tctggtattccattcaatggcccgattggcgctgcccgcgttggttatattaatgatcaa
tacgtgctgaacccaactagtgatgagctgaaaaatagccgtttggatctggtggtttca
ggtactgctggtgctgttttgatggtggagtctgaagcagatctgctgactgaagagcaa
atgctgggggcggtagtgttcggtcatgatcaacagcaagtggttattgataacattaat
gcgttggctgcggaagcgggcaaagagaaatgggattgggtgccagaacctgttaaccag
gcgttgcatgatcgtgtagctgaattggcggaaagccgtctgggtgatgcttaccgtatc
actgagaaacaggagcgttatgctcaggttgatgctatcaaagatgaagttacagctgcg
ttgttggaacaggatgaaactttggaagaagcggaaatccatgaaattctgggcagctta
gagaaacatgttgttcgtagccgtgtcctgcgcggtgaaccacgtattgatggccgtgaa
aaagatatggttcgtgcgttggacgtacgtactggtgttctgccccgtactcacggttct
gcattgtttacccgcggtgaaactcaggctctggttactgcgactctggggacagagcgt
gatgcacagatcattgatgagctgatgggcgaacgtacagatcgcttcttgctacattat
aattttcctccctattctgttggcgaaacaggtatgatggggtcaccaaagcgtcgtgaa
attggtcatggccgtttggctaaacgtggtgtattggcagtcatgccaaaagctaacgag
ttcccatacacagttcgtgtagtttctgaaattacagaatctaacggttcatcttcaatg
gcatctgtttgtggtgcatctcttgcgttgatggatgcaggtgtgccgattaaagccgct
gttgctggtattgcaatgggtctggtgaaagaaggtgataactttgttgttctgtctgat
attctgggtgatgaagatcatctgggtgacatggacttcaaagtagcgggtagttgtgaa
ggtgtcagtgcgctgcaaatggatatcaaaattgaaggtatcacccgtgaaattatgcaa
gttgcgttgaatcaggcaaaaggtgcgcgtttgcatatcctgagcgtgatggagcaggca
attaacagcccacgtaatgatatttctgaatttgcgccacgtattcacactatcaagatt
aacccagacaagatcaaagatgttatcggtaaaggtggttcggttatccgtgcattgact
gaagaaactgggactaccattgagatcgaagatgatggcacagtgaaaattgctgcaact
gatggcgaaaaagcaaaacatgcaatcagtcgtattgaagaaattactgcggagatcgaa
gttggccgtatttacgccggtaaggtaacccgtatcgttgattttggcgcatttgttgct
atcggtggtggtaaagaaggcctggtacatatttcgcagattgctgataagcgcgttgag
aaagtggctgattatttgcaggttggtcaggaagtatcagttaaagtactggaaattgat
cgccagggccgtgttcgcctgagtatcaaagaagcgacagccggcacagctgttgaggaa
gcaccaccagcaccacaatcagcagaataa
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