Photorhabdus thracensis: VY86_10385
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Entry
VY86_10385 CDS
T03944
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VY86_10385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptt03019
]
VY86_10385
03009 Ribosome biogenesis [BR:
ptt03009
]
VY86_10385
Enzymes [BR:
ptt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VY86_10385
Messenger RNA biogenesis [BR:
ptt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VY86_10385
Ribosome biogenesis [BR:
ptt03009
]
Prokaryotic type
rRNA helicases
VY86_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKH63682
UniProt:
A0A0F7LPD5
LinkDB
All DBs
Position
2403950..2405881
Genome browser
AA seq
643 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLSQRRLEKFAANVQQQLESSDLEQYRALLSKLQPAEDLDIE
TLAAALLKMAQGERPLILPPDPVRRPRREFNERDDRRRNSFDDRGERGERSDRPRRERRD
VGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLL
SHFTRTRILNKPMNMQLMGDAQPFERRERRGGPRNGNSNGNAPRRDRENFNGGGRRFSGE
RRSGEGRSGENRGEGQSRSNFRGRSDENSSSAPRRRYNNSNAQ
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatctgggtttatcagcacctattctttct
gcactggaagatcttggctatgaaaagccatccccaatccagcaacaatgtattccccat
ttactgaatggtcgtgacgtgttgggtatggcacagaccggcagtggcaaaacggcggca
ttcagcctgcctttattgcataatatcaatgctgagctaaaagctcctcagatccttgtg
ctggcaccgactcgtgaactggcggtacaggtagctgaagcgtgcgcagatttttctaaa
catatgcgtaacgtgaatgttgttgcactgtatggtgggcaacgttatgacgttcaatta
cgtgctttgcgccaaggcccacagattgttgtaggtacacctgggcgtcttctggatcac
ttgaagcgtggtactctggatctttctaacctgagcggtttagttttggatgaagcagac
gaaatgctgcgcatgggattcatcgaagatgttgaaaacatcatgagccagatcccggca
gagcaccaaactgcgctgttctctgcaacgatgccggaagctatccgccgcatcactcgt
cgtttcatgaacgatcctcaggaagtgcgtatccaggcgagtgtaactacccgtcctgac
atcagccagagctactggtctgtttacggtatgcgtaaaaatgaagcactggtgcgtttc
ttggaagctgaagattttgatgccgcgattattttcgtgcgtaccaaaaatgcaacactg
gaagtggcggaagcactggagcgtagtggttacaatagtgcggccctgaacggtgatatg
aaccaggcactgcgtgagcagacactggaacgtctgaaagatggtcgtttggatattctg
atcgcaacggatgttgcagcgcgcggtctggatgttgagcgtatcagtctggttgttaac
tatgatattccaatggatgcggaatcttatgttcaccgtattggccgtacaggtcgtgcg
ggacgtgctggccgtgcgttgctgtttgtagaaaaccgtgaacgccgcctgttacgtaac
gttgaacgtacaatgaagttgactatccctgaagttgaactgccgaatgccgagttgctg
agtcagcgccgtctggaaaaattcgcagccaatgtgcagcaacaactggaaagcagcgat
ctggagcagtatcgtgctctgttgtctaaattgcaacctgcggaagatttggatatagaa
actctggcagcggcgttgttgaaaatggcacaaggtgagcgtccgttgattctgccacca
gatccggttcgccgtcctcgtcgtgagttcaacgagcgtgatgatcgtcgtcgcaatagt
ttcgatgatcgtggtgagcggggtgaacgtagtgatcgtcctcgccgtgaacgtcgtgat
gttggcgaaatggaactgtaccgtattgaagtgggtcgtgatgatggtgttgaagttcgt
catatcgttggtgcgattgctaacgaaggcgatatcagcagccgttatattggtaacatc
aaactgtttgcaactcattctacaattgagctgccaaaaggtatgccaggcgacttgctg
tctcactttacccgtactcgtattctgaataaaccaatgaatatgcagttaatgggtgat
gctcaaccatttgaacgtcgcgaacgccgtggtggcccacgtaatgggaacagtaatggc
aatgctcctcgccgtgatcgtgagaatttcaacggtggtggccgtcgtttcagcggtgaa
cgccgtagtggcgaaggtcgtagtggtgaaaatcgcggtgaaggccaaagccgtagcaat
ttccgtggccgtagcgatgagaatagttcatctgctccacgtcgtcgttataacaacagc
aacgcgcagtaa
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