Photorhabdus thracensis: VY86_15265
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Entry
VY86_15265 CDS
T03944
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VY86_15265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptt03019
]
VY86_15265
Enzymes [BR:
ptt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VY86_15265
Messenger RNA biogenesis [BR:
ptt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VY86_15265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
UvrD-helicase
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKH64482
UniProt:
A0A0F7LRV9
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All DBs
Position
3542302..3543591
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AA seq
429 aa
AA seq
DB search
MSFESLGLSADILRAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML
QRLNDSPVQMKGRRPVRALVLTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPK
RQNLLFSATFSDDIKNLANKLLHDPVSIEVARRNSASEQIEQFVHFVDKKRKGELLSFLI
GSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDI
ERLLKREIPRMAIPGYEPDPTIKAEPIQNGRQGRGDNRQKNSHHRSGAPSRQRSRNHADV
SNKASSARG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaatcacttggcttaagtgctgatattttgcgtgccattgaagaacaaggt
tattcagcgccaacgccaatccaacagcaggcaatccctgttgtattagcaggtaaagat
ttattagcgagcgctcagactggcacaggtaaaactgcgggttttactttacccatgctg
caacggctcaatgactcccctgttcagatgaaagggcgcaggccggtcagagcgttagtc
ctgacaccaacccgtgaattggctgctcaggttggtgaaaatgtacgtgactacagcaaa
tacctcagacttcgttctctggtggtttttgggggggtcagtattaaccctcaaatgatg
aaattgcgtggtggtgttgatattttagtcgcgacaccaggtcgtttactggatcttgaa
caccagaatgcggttgatttgtcgcgagtggaaattctggtattggatgaagccgaccgt
atgctggacatgggttttatccatgatatccgtcgggtactgaataagttaccaccgaaa
cggcaaaatttactgttttctgccactttctccgacgatatcaaaaatttagccaataaa
ttattgcatgatcctgtcagtatcgaggttgcacgccgtaactccgcttctgaacagatt
gaacaatttgtccattttgtcgataaaaagcgtaaaggtgagctgctttctttcctgatc
ggtagccgtaactggcaacaggttttggtctttacccgtaccaaacatggtgcaaatcgt
ctggcagaacagttaaataaggatggtgtaactgcttcagccattcatggtaacaaaagc
cagggggccagaacccgtgcgctggctgattttaaagatggccgcatcagggtgctggta
gcgacagatattgctgcccgtggtctggatattgatcaattgcctcatgtcgtgaatttt
gaattgcctaatgtttctgaggattatgtccaccgtattggtcgtaccggtcgggcagat
gcaacagggcaggcgctttctctggtatgtgttgatgagcacaaattgctgaaagatatt
gaacgcctgctgaaacgggagattccccgtatggcgattcccggatatgagccggaccca
accatcaaggctgaacctattcagaatggtcgccaggggcgtggcgataaccggcagaaa
aatagccatcaccgttctggagcaccttcgcgtcagcgcagccgtaatcatgctgatgta
tcaaataaagcgtctagtgccagaggttag
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