Photorhabdus thracensis: VY86_17040
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Entry
VY86_17040 CDS
T03944
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VY86_17040 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_17040 (sbcB)
Enzymes [BR:
ptt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VY86_17040 (sbcB)
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VY86_17040 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VY86_17040 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VY86_17040 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AKH64788
UniProt:
A0A0F7LS72
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All DBs
Position
complement(3947744..3949174)
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AA seq
476 aa
AA seq
DB search
MKNSSEQPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFKIIEEPLVIYCSPADDYLPQP
EAVMITGITPQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQKSNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHSHAH
DAMSDVYATIAIAKLLKEAQPKMFNYFFQLRNKQKVSNLIDIPQMKPLVHVSGMFGAARS
NISLVAPLAWHPINQNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPIKL
IHINKCPIIAPDNTLRTEDAERLGLDRSHCERNLTILRNNPQIREKVVELFAEAEPFPES
DDVDAQLYNGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKKLLLRYRARNYPATLT
YDEQQSWLRHRQDVLTQDKLSEYIFIIEQLFIEHQGNDEKCRQLKALMEYAAKLAG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaacagcagcgaacaacccactttctacattcacgactacgaaactttcggtaaa
cacccagcattagacagacccgctcagtttgccggtgtccgcactgatatggatttcaag
attattgaagaaccattagttatttactgttcacctgctgatgattatctccctcagcca
gaagcggtcatgatcacgggaattacgcctcagattgccttggaaaaaggcgtcaacgaa
gcggaatttgcccgccaaatccataatgcgttcagtgtgccgaatagctgtattctcggt
tataacaatatccggtttgatgatgaagttagccggaatattttttaccgcaatttttat
gatccctacgcttatagctggcaaaaaagcaattcccgttgggatttacttgatgtatta
cgcgcctgttatgccctgcggcctgaaggtattatttggccggagaatgaggatggtctg
cccagctttaaactggagcatctgacgaaggcaaacggcgttgaacattcacatgcccac
gatgcaatgtccgatgtttacgccacgattgcaatcgcaaaattgcttaaagaagctcaa
cctaaaatgttcaattatttctttcagttaagaaataagcagaaagtcagcaatctcatt
gatattcctcaaatgaaacccttggttcatgtttccggtatgtttggcgctgcccgtagt
aatatcagcctggttgcgcctctcgcatggcacccaataaaccagaatgccgttatcatg
tgcgatttggcgggagatatttcacccttgctggaattagatgccgatgctttgcgtgaa
cgcctatatacccgccatgatgaattgctgcccgatcaaccaccagcccccatcaaactg
attcatattaataagtgtccgataatcgcccctgataatactttgcgtacagaagatgct
gaacgtcttggtttggatcgtagtcattgtgagagaaatctgacgattctgcgaaataat
ccacaaatcagagaaaaagttgtagaactctttgctgaggccgaacctttccctgaatca
gatgatgttgacgctcaactgtataatggcttctttagtgatgcagataaaacagcgatg
aatattatccgtgaaacattacctcagaatttgcctgcgttggatctgacttttcaggat
ccgcggattaaaaagctgttattacgttatcgagccagaaactaccctgcaactctgact
tacgatgaacaacaaagctggttgcgtcatcgccaagatgtattaactcaggacaagctc
agtgaatatatctttatcattgaacaactctttattgaacaccaaggcaacgacgaaaaa
tgccgtcaacttaaagcactaatggaatatgcagcgaaactggctggataa
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