Photorhabdus thracensis: VY86_17230
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Entry
VY86_17230 CDS
T03944
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VY86_17230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_17230
Enzymes [BR:
ptt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VY86_17230
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VY86_17230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKH64819
UniProt:
A0A0F7LNC0
LinkDB
All DBs
Position
complement(3983197..3986643)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSSKYRYELPERRGDSRQLGQLTGAAYAVECAEIVERHQGPVVLITKDMQNALRLHDEIH
QFTDCPIDLLSDWETLPYDSFSPHQEIISNRLSTLYRLPTMTKGVLILPINTLMQRVCPH
EFLHGHALVMCKGQRLSRDKLRTELEQAGYRSVEQVLEHGEFATRGALLDLFPMGSEHPY
RIDFFDDEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKETIELFRSQWRERFEVRRD
GEHIYQQVSKGTLPAGIEYWQPLFFNQPLPSLFEYLPDNTLIINQEITPSAERFWQDAQQ
RFESRKVDPMRPLLPPEELWLPADKLFSELKNWPRIQLKTEELSKKTSHINLDYQRLPDL
AVVAQNKAPLDKLRRFLEQFSGRVIFSVESEGRKETLQELLSRINIKPIKISKLHEAQQS
GYFLMIGAAEHGFIDAKNALALICESDMLGERVVRRRQDTRRTINTDTLIRNLAELHPSQ
PVVHLEHGVGRYQGLTTLEAGGIKAEYLILSYAGNDKLYVPVSSLHLISRYAGGADENAP
LHKLGGEAWSKARQKAAEKVRDVAAELLDIYAHRTVKPGFAFKHDWEQYQLFCQSFPFET
TPDQEQAINAVLNDMCQPVAMDRLVCGDVGFGKTEVAMRSAFLAVHNDKQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAEGKVDIIIGTHKLLQSGLRWK
DLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPA
RRLAVKTFVREYDSLVVREAMLREILRGGQVYYLYNEVENIEKAKLRLEELVPEARIAVG
HGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMTTIGFTLYMELLESAVNALKAGREPSLEDLVNSQTEVELRMPVLLPDSYIPEVN
MRLSFYKRIASARDESELAELKVELVDRFGILPDPGRHLLQSAAIRLSAQKLGIKRIEAH
EKGGFIEFSEKNKVDPTYLISLLQKQPEIYRLDGPAKLKFITDLNERMARLEFIQQLMST
FEHHQVSF
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaaaataccgttatgaacttcctgaacgccgcggtgatagccgccagttaggc
caacttactggcgcagcttatgctgtagagtgtgctgaaattgtcgaacgccatcaaggc
cctgtggtactgataaccaaagatatgcaaaacgccttacgtctgcatgatgaaatccat
cagtttaccgactgccctattgatctcctttctgactgggaaacattgccgtatgacagt
ttttcccctcatcaggaaattatttccaatcgcctgtccacactctaccgtctgccaaca
atgaccaaaggtgttttaatcctgccgataaataccttgatgcaacgggtttgccctcat
gaatttcttcacgggcatgcgctggtcatgtgcaaaggtcaaaggctttcgcgggataaa
ctgcgtacggaattggaacaggcgggctatcgcagtgttgaacaagttcttgaacatggt
gaatttgctacccgtggcgccctgcttgatctttttccaatggggagcgagcacccttat
cgtattgattttttcgatgatgaaattgatagtctgcgaattttcgatgttgacagccaa
cgcacgctgaccgaggtcaagcaaatcaacttactgcccgctcatgaattcccaacggat
aaagagactattgaactgtttcgcagccagtggcgagaacgttttgaagtccgtcgtgac
ggtgaacacatctatcagcaagtcagtaaagggacattaccggcagggatagaatactgg
caacccctgtttttcaaccaacccttgccttcgctatttgagtatctgccagacaacact
ttgattatcaatcaagagataaccccctccgcggaacgtttctggcaagatgctcaacaa
cgttttgagagccgtaaagttgaccccatgcgtcctctcttaccaccggaagaactttgg
cttccggctgataagctattctccgaactcaaaaactggccccgcattcaactcaaaacg
gaagagctcagtaaaaaaaccagccacatcaatcttgattatcaacgactgccggatctc
gccgttgttgcacaaaataaggcacctctggataagcttcgccgttttcttgaacaattc
agtggccgcgttattttctccgttgagagtgaaggccgaaaagaaacgttgcaagaattg
ttgtcacggataaatattaagccaattaaaatcagcaaattacatgaagctcaacaatca
ggctactttttgatgattggtgcggctgaacatggttttattgatgcaaagaatgcactt
gctctgatctgtgaaagtgacatgcttggtgagcgtgttgttcgccgccgtcaggatacc
cgccgcacgatcaatacagatactctgatccgtaaccttgcagaactacatcccagtcag
ccggtggttcatctggaacatggtgttggccgttatcaggggttaaccactctggaagca
ggggggatcaaggctgaatatctgatcctgagttatgccggtaacgacaaactctatgtt
ccggtgtcttccctgcacctgattagccgctacgcaggtggcgcagatgaaaatgcgcca
ctacataaattgggcggagaggcatggagcaaggcccgccagaaagcagccgaaaaagta
cgcgatgtggctgcggagttgcttgatatttatgcccatcgcaccgtaaaaccagggttt
gcttttaaacatgattgggaacaataccaactgttctgtcagagcttcccattcgaaact
acaccagatcaagagcaggcgattaacgccgttctcaatgatatgtgtcaacccgtggcg
atggatcgcctggtttgcggtgatgtcggatttggtaaaaccgaagttgcgatgcgctct
gcatttctggccgtccataatgacaagcaagtggcggtattggttccgacaactcttctg
gctcaacaacattttgataatttccgtgaccgttttgctaattggccggtacgtattgaa
atgatatcccgtttccgcagcgcgaaagagcagcagcaagtcgttgagatggcagccgaa
ggtaaagtcgatattattatcggtactcataaattgctgcaaagtggcctgcgctggaaa
gaccttggtttattaattgtcgatgaggaacaccggtttggtgttcgccataaagagcag
atcaaagctatgcgcgccgatgtggatattctgacacttaccgcaactcctattccgcga
acgctcaatatggcaatgagtagtatgcgggatctctcgatcatttcgacaccgcccgcc
cgtcgcctggcggttaaaacattcgtgcgcgagtatgacagcctggttgttcgggaggcg
atgttgcgtgaaattttgcgcggtggtcaagtctactacctctataatgaggttgaaaat
attgagaaagcaaaactacgcctcgaggagttagtgccagaagcacggatcgccgttggt
catgggcaaatgcgtgaacgggatttagaacgggtgatgaccgatttccatcatcagcgg
tttaatgtcctgatttgcaccaccattattgaaacaggcatcgatattccaagcgccaat
accatcattatcgaacgtgctgaccatttcggcctggctcaattgcatcagctacgagga
cgtgtcggacgctctcatcatcaggcttatgcttatcttctgacgccacatccgaaagcc
atgacaaccgatgcacacaaacgtctggaagcaatcgcttcccttgaagatttaggcgct
ggttttgcactggcaacccatgaccttgagatccgcggagctggtgaacttctcggtgaa
gaacaaagtggccagatgacaacgattggcttcacactctatatggagctactggaaagt
gctgtcaatgcattaaaagcaggtcgtgaaccttcacttgaagacttggtgaatagccag
acggaggttgaattacgtatgcctgttttactgcctgacagttatattcctgaggtcaat
atgcgtttatctttctataaacgcattgccagcgccagagacgaatcagaattggcagaa
ttaaaggttgaattggtagaccggttcggcatattacctgatcctgggcgccatttatta
caatcagcggcaattcgcttatctgctcagaaattagggattaagcgcatagaagcccat
gaaaaaggcggtttcatcgaatttagtgagaaaaataaagttgatccaacttatcttatc
agcctgttacagaaacagcctgagatttaccggctggatggccccgctaaattgaaattc
attactgacctgaacgagaggatggcgcgtctggagtttattcagcagttaatgagtact
tttgaacatcatcaagtaagtttttaa
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