Photorhabdus thracensis: VY86_19315
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Entry
VY86_19315 CDS
T03944
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ptt
Photorhabdus thracensis
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptt03016
]
VY86_19315
Enzymes [BR:
ptt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VY86_19315
Transfer RNA biogenesis [BR:
ptt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VY86_19315
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
AKH65938
UniProt:
A0A0F7LVD4
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All DBs
Position
complement(4426345..4428288)
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AA seq
647 aa
AA seq
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MFQNNPLLAQLKQQLHSQTLRVEGLVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRV
TAAIHTDKEREIAEPETLVEPFLNRFVGRIQKKENDNRLWIVPDHPLLKDAIPCRPANQV
THPFQNGDWAVAEMRHHPLKGSRGFHAEITGYITEGDNHYAPWWVTLTRHNLERNAPEMT
ADCQLNDGDLERIDLTSLDFVTIDSATTEDMDDALHVAKQDDGSLKLSIAIADPTAYIAT
DSELDKIAHQRAFTNYLPGFNIPMLPRDLSENLCSLRPNERRPALVCQVSILEDGQLGDD
IAFFSTWVESKAKLVYDEVSDWLEGKGTWKPASESITTQINLLKEMSERRNQWRHQHALI
FKDRPDYRFILDENGYVLDIVVEQRRASNRIVEEAMITSNLCAAKILRDKLGFGVYNVHT
GFEPLQIEQVVELLKENGIEENAEELLTLDGFCKLRRELDKQPTQFLDSRIRRFQTFAEI
KPEPGPHFGLGFDAYATWTSPIRKYSDMVNHRLLKAIIQKTDAEKPAEETCLQLAERRRL
NRMAERDVGDWLYARFLQPHAGTEQQFTAEIIDITRGGLRVRLVDNGAVAFIPAPFLHAV
RDELQCSQETGTVIIKGETAYQLNDIIDVRIEEVRMETRNIVARPAA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaacaatccgctgcttgcacagctaaaacagcaacttcattcccagacactc
cgcgtagagggcctcgtaaaaggcacagaaaaaggtttcggatttctggaagtcgatggg
caaaaaagctatttcattccgcctccacaaatgaaaaaagtgatgcatggcgatcgggtt
accgccgctattcatactgataaagaaagagagatcgctgaaccagaaacattggtcgaa
ccatttctgaatcgcttcgttggccgtatccagaaaaaagaaaatgacaaccgtctatgg
atcgttcctgatcaccctctgctaaaagacgctatcccttgccgcccggctaatcaagtc
actcatccgtttcaaaacggtgactgggccgtcgctgaaatgcgccatcatcctctgaaa
ggaagccgtggctttcatgcagaaattaccggctatatcaccgaaggcgacaatcactat
gcaccctggtgggtaacactgacccgtcataatctggaacgtaatgcgccagagatgact
gccgattgccaattgaatgatggcgatcttgagcggatagacttaacttctctggatttt
gttactatcgacagtgcgaccacagaagatatggacgacgctttgcatgtcgccaaacaa
gatgacggcagcctgaaactcagcatagccattgctgatccaacagcttatatcgcaact
gacagcgaactggacaaaattgcccatcaacgcgctttcactaactacctgccaggtttc
aacatccccatgctgccgcgcgatctgtcagaaaacttatgttctctgcgtccgaatgag
cgccgccctgcattggtttgtcaggtgtctattcttgaagatggtcagcttggtgacgat
atcgcgtttttctctacctgggttgaatcaaaagcgaagctggtttacgacgaagtttct
gactggctggaaggaaaaggtacctggaaacctgcttctgaatccattacaactcaaatc
aatctcttaaaagaaatgagtgaacgccgtaaccaatggcgccaccaacatgcccttatt
ttcaaagatcgccctgattaccgctttattcttgatgaaaatggttatgtgctggatatc
gtcgtagaacaacgtcgtgcatcaaaccgtattgtcgaagaagctatgatcacttctaac
ctgtgcgcggcaaaaatactgcgcgataaattaggctttggcgtctacaatgtccatacc
ggttttgagccactccagattgaacaagtggttgaattactgaaagaaaatggtatcgaa
gaaaatgcagaagagttgctgacactggatggcttctgcaaattacgccgtgaattggat
aaacagccaacacaattccttgatagccgtattcgccgtttccagacttttgcagaaatt
aaacctgaacctggtccccattttggcctcggttttgatgcttacgccacctggacatca
ccaatccgtaaatacagcgatatggttaaccatcgcttactgaaagcgattatccaaaaa
acggatgcagaaaaaccagcagaagaaacctgcctgcaactggctgaacgtcgccgcctg
aaccgtatggctgaacgcgatgtgggtgattggctatatgcgcgtttcctgcaaccacat
gccggaaccgagcaacaatttaccgcagagatcattgatattacccgcggtggtttacgt
gtccggctggtagataatggcgcggtcgcctttataccggcaccattcctgcatgctgtg
cgtgatgaactgcaatgtagtcaagagaccggcacagtgattatcaaaggtgaaaccgct
taccaattgaatgacattatcgacgtccgtatcgaagaggtaagaatggaaacgcgtaat
atcgtcgcgcgtcccgctgcctga
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