Pseudoalteromonas tunicata: PTUN_a1650
Help
Entry
PTUN_a1650 CDS
T05187
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptu
Pseudoalteromonas tunicata
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptu03019
]
PTUN_a1650 (hrpA)
Enzymes [BR:
ptu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PTUN_a1650 (hrpA)
Messenger RNA biogenesis [BR:
ptu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PTUN_a1650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
nSTAND3
T2SSE
NACHT
CATSPERG_NTD
SLFN-g3_helicase
AAA_25
ABC_tran
AAA_30
HA2_N
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ATC94251
LinkDB
All DBs
Position
I:1502106..1505996
Genome browser
AA seq
1296 aa
AA seq
DB search
MAQATRELYRSLKQCLNKDQFFFKRRLDGIAKIKNEEKQAKVLAEVTLAIEKSIATRAQR
LANLPKVSYPENLPVSQKKDDIKEAIANNQVVIVAGETGSGKTTQLPKICLELGRGAAGF
IGHTQPRRLAARTVANRIAEELNCPLGQEVGFKIRFNDQVSDKTAVKLMTDGILLAEIQH
DRFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPRRPDLKVIITSATIDPERFSKHFNDA
PIIEVSGRTFPVDVRYRPITEVDKDEMEAEGDQLQGIFDAVDELMAEGPGDILIFMNGER
EIRDTAEALGKRNLKHTEVLPLYSRLSNAEQNKIFASHSGRRIVLSTNVAETSLTVPGIK
YVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVQAGICIRLYSEDDFLGRP
EFTDPEILRTNLASVILQMLALGLGDISQFPFVQPPDNRNITDGLRLLEELEAVEEVQAG
KTPKLTQSGKELSRLPVDPRLAKMVLAAKQFNSVFEVIVIVAAMSIQDPRERPREKKAQS
EEKHQRFNEPDSDFIAFLNLWRYLEEQQQALSNNQFRRMCQQEFLAYMRVREWQDLVYQL
TTVCQEMNVAINNEPAGFDAIHQALLAGLLSHIGFKDEDNSYKGARNSRFHVFPGSSLFK
KSPKWLMAAELVETSRLFARINAKIDLKWVEPLAQHLIKRSYSEPHWEKKPGCVIALEQQ
TLYGLIIVNQRRTVYSKIDPKLSRELFIREALVNQELGKDEGFLKHNLALVEDIQSLENK
ARRRDILVDDQTLFEFYDKKIPEHVNNRNDFAHWWKKQQKADAGFLNMTRENLMMHQANH
ISAADYPDVWQQDRLMLPLEYHFEPGKAVDGVALQIPLALLNQVEDIGFDWHIPAFRHEL
ITGLIKSLPKATRRNFVPAPNFADAVMATLAPMQGKFIEAVSQKLLKMSGIRIDENEWDY
TALASHLRIMFEVRDDKGALLARNHNLQALKDQLQGKVSDTLSKVADKGIEKTELIEWDF
GALPEAYVKKQAGYEIKAFPALVDKKSSAAVELFDSQLKAEQAHKHGLRRLILLNIPSPI
KYLQQKLPNKAKLGLYFNPFGQVKDLIDDCIAAGVDTLCPDFALIRDEADFNRAKEKVRG
ELGDAVVQIATEVEQVLSLANAVHKRLKGKVDLSMITAHGDIKQQLSTLVFKGFVCQFGA
EKLKDLVRYLQAIERRLEKLPVDPNRDRLCVLELNKVAEAYQGEVNKVPKGYVLPEALQA
IFWMQQELRVSFFAQTLGTPYPVSAKRVLNAINELK
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcaactcgtgagttatatcgctcattaaaacagtgtttaaacaaagatcag
tttttctttaaacgtcgcttagacggtatagcaaaaataaaaaatgaagaaaaacaagcc
aaagtactcgctgaagtaactctggcgattgaaaaaagcatcgccacacgggcgcagcgt
ttagccaatttgcctaaagtgtcttatcccgaaaatttgccggtcagtcagaaaaaagac
gacatcaaagaggccatcgccaataaccaagtggtgattgttgcgggcgaaacgggctcg
ggtaaaaccacgcagttacctaaaatttgtttagagcttggccgaggtgcagcgggcttt
attggtcatactcagccacgccgattagccgcacgtaccgttgccaaccgaattgctgaa
gagcttaattgcccacttggtcaagaggttggttttaaaattcgatttaacgatcaggta
tctgataaaaccgcggttaaactgatgaccgacggtattttattggcggaaattcagcac
gaccgctttttaaatcaatacgatactatcatcatcgatgaagcccatgagcgtagttta
aacatcgactttattttaggttatttaaaaaacctattaccgcgacgccccgatttaaaa
gtcattattacgtctgccactatcgatcctgaacgtttttctaagcattttaatgatgcg
cccattattgaagtatcgggtcgtacgtttccggttgatgtgcgttatcgtcccattacc
gaggttgataaagacgaaatggaagccgaaggcgaccaactgcaagggatttttgatgcg
gttgatgagctgatggcagaaggcccaggcgacattttgatttttatgaacggtgagcgc
gaaattcgcgataccgccgaagccctcggtaaacgtaacctcaaacataccgaagtgctg
ccgctttattcgcgcttatcaaatgcagagcaaaacaaaatttttgccagccattcaggc
aggcgcattgtgctgtcaacaaacgtcgctgaaacttcgttaaccgtgcctggcattaaa
tacgttatcgaccccggcacagcccgtattagccgttacagttaccgcaccaaagtgcaa
cgtttaccgattgaggcgatttcacaagcgtcggccaatcaacgaaaaggccgttgtggt
cgtgtacaagcgggtatttgtattcgcttatattcagaagacgattttttaggtcgccca
gaatttaccgatcctgaaatactgcgcaccaatttagcctcggttattttgcaaatgctg
gctttagggctcggcgacattagccagttcccatttgttcagccgccggataatcgcaat
attaccgatggtttacgtttgctggaagaactcgaagccgttgaagaagttcaagcgggt
aaaacgccaaaactgacacaatccggtaaagaattaagtcgtttacccgttgatccgcgt
ttggccaaaatggtactggcagccaaacaatttaattcagtattcgaagtgattgtgatt
gtcgcggcgatgtcgattcaagacccgcgcgaacgaccacgtgagaaaaaagcgcaaagc
gaagaaaaacaccagcgctttaatgagccagattctgattttatcgcctttttaaattta
tggcgttaccttgaagagcaacaacaagcgctttcgaataatcaatttagacgtatgtgc
cagcaagagtttttggcctatatgcgcgtgcgtgaatggcaagatttggtttatcaactg
accacagtttgccaagaaatgaatgtggcgataaacaatgaacctgcggggtttgatgct
attcatcaagcgttattggccggtttgctgagccacattggttttaaagatgaagataac
agttataaaggtgcacgtaattcgcgttttcatgtttttcctgggtcaagtttattcaaa
aagagtccaaaatggcttatggcggcggagctagtcgaaaccagccgtttgtttgcccgc
attaatgccaaaatcgatttaaagtgggttgagccattagcacagcatttaattaagcgc
agttattcagaaccacactgggagaaaaagcccggctgtgtgattgcacttgagcaacaa
acgttatacgggctgattattgtcaatcagcgccgcactgtgtacagcaaaatcgaccca
aaactgagccgtgagctatttattcgcgaagcgcttgtgaatcaagagctgggtaaagac
gagggctttttaaagcataatttggccttagttgaagatattcaaagccttgaaaataaa
gcgcgtcgtcgcgatattttggttgatgaccaaaccttgtttgagttttacgacaaaaaa
atccctgagcatgttaataaccgtaacgattttgctcactggtggaaaaaacagcaaaaa
gcggacgctggttttttaaatatgacccgcgaaaacttgatgatgcatcaagcgaatcat
atttcggcagcagattaccccgatgtttggcaacaagaccgtttaatgttgccacttgag
taccatttcgaaccgggtaaagcggtcgatggggtcgcgctgcaaatcccattggcgcta
ctgaatcaggttgaggacattggctttgattggcatattccagcgtttcgccacgagctt
attacaggtttaattaaatcgttgcctaaagcaacgcgccgcaattttgtacccgcgcct
aattttgctgatgcggtgatggcgacccttgcgccaatgcaaggcaagttcattgaagcg
gtgagccaaaagctgctgaaaatgagtgggatccgcattgatgaaaacgagtgggattac
actgcgcttgcatcacatttacgcataatgtttgaagtgcgtgacgacaaaggcgcgttg
cttgcgcgtaaccacaatttacaggcgctcaaagatcagttgcaaggtaaagtcagcgat
accttgtctaaagtggcggataaagggattgaaaaaaccgagctaatcgaatgggatttt
ggtgcgttacccgaagcttatgtaaaaaaacaagctggttacgaaatcaaggcgtttcca
gctttagtcgataaaaaatcatcggcggcggttgagctgttcgattctcagctcaaagca
gagcaagcccataaacatggattgcgccgcttaattttgctcaatattccatcgccaatt
aaatacttacagcaaaaactgccaaataaagccaagcttgggctttattttaatcctttt
ggccaagttaaagatttaattgatgactgtattgccgcaggggttgataccttatgtcct
gactttgcgctgatccgcgatgaagcggactttaaccgtgccaaagaaaaagtgcgcggt
gagcttggcgatgccgtggtgcaaattgccacggaagttgagcaagtgctgagccttgct
aatgcggttcataaacgcctaaaaggtaaagttgatttgagtatgatcaccgctcatggt
gacatcaaacaacagctttcaacattagtttttaaagggtttgtgtgtcaatttggtgct
gaaaaactcaaagatttggtacgttatttacaagcgatagaaaggcgcctggagaaatta
cccgttgatccaaatcgcgaccgactgtgtgtacttgaacttaataaagtggcagaggcc
tatcaaggcgaagtgaataaagtgccaaaaggctatgtgttacctgaagcattacaggct
attttttggatgcaacaagaattgagagtgtcgttttttgcgcaaactcttggcaccccg
tatccagtttcggcaaaaagagtgctaaatgcgattaatgaactaaaataa
DBGET
integrated database retrieval system
