Pseudoalteromonas tunicata: PTUN_a1793
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Entry
PTUN_a1793 CDS
T05187
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PTUN_a1793 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptu03400
]
PTUN_a1793 (recD)
Enzymes [BR:
ptu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PTUN_a1793 (recD)
DNA repair and recombination proteins [BR:
ptu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PTUN_a1793 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
SH3_13
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
UvrD_C
AAA_28
DEAD
AAA
CbiA
NTPase_1
T2SSE
zf_topless
TrwB_AAD_bind
Herpes_U44
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ATC94375
LinkDB
All DBs
Position
I:1659362..1661173
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AA seq
603 aa
AA seq
DB search
MLAQLIADEKVTQLDIQLAQLLVKDSNDPVFYVVLLLSQYNARQHTCLPLAQVDWSNPFM
LETPVPLFASYEHCLTALRDHPVVGEGKPLLLFAERLYFARYAEYEQILANKLHSLAKRA
LKLDESRLAQLLDQYFGTTPTLDWQKIACAMAVQNAFCVISGGPGTGKTTTVTKLLAILQ
SLYLAAPLSIKLVAPTGKAAARLSESIRDAKQKLELAPNLNAVIPEQAQTIHRLLGVIPQ
SNKYRHNSHNPLHLDLLIVDEASMVDLALMAKLVEAMPEHGRLILLGDKDQLTSVDTGNV
LADICQDLVLGVQPFYSEARVLQLNKLCHQGQHTALQAKQSDYVLADNIAFLQHSHRFDE
KSGIGQLAKAVNSNDKQLLQEIKAFGYPELAFYDLTNEYKAMIIRCAEAYSQYLALIKQG
ASPQEVHDAFLQYQLLAAVREGNYGVNKLNSKIEAQLARMGLISPSHRHYVGMPLMISQN
DYQLKLFNGDIGIIMPDDDGQLKAVFMSEGGSTRSFYPARLPAHEKVYAMTIHKSQGSEF
LHTVMILPPMQQAKIGVNRQLVYTGITRAKKRFDLIAQPQVLQLAMNKMLTRSSGLYQRL
QQS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgcaactaatagcagacgaaaaagtcacgcaactggatattcaattagcccag
ttgttagttaaagatagcaatgacccagttttttatgtggtgttgctactgagtcaatac
aatgcgcgccagcatacttgtttacctttggcacaggttgattggtcaaatccgtttatg
ctcgaaacgccagtacctttatttgcaagctatgagcattgtttaacggcactgcgtgat
catcctgttgtaggtgaaggcaagccactgcttttatttgctgagcgtttgtactttgct
cgttatgcagaatatgaacaaatattagcaaataaactccatagcttagcaaaacgtgcg
cttaaactcgacgaaagccgcttagcgcaattgcttgatcagtattttggcacaacacca
accctagattggcaaaaaatagcctgtgcaatggcggtacagaatgctttttgtgtcatc
agcggaggcccaggcaccggaaaaaccacgacagtgactaaattgctagcgatactgcaa
tcactttatttggcagcgccactgagtattaagttggtggcacccacaggaaaagcggct
gcgcggctcagtgagtcaattcgtgatgcaaaacaaaaactcgaactggcgcccaattta
aatgccgttattcctgagcaagcacaaacgatccatcgattacttggggtgatcccacag
tcgaataaatatcgccataacagccacaatccgttgcatttagatttactgattgttgat
gaagcgtcgatggtcgacttagcgttaatggcaaagctggttgaagcaatgccagagcat
ggtcgtttgattttactcggtgataaagaccaacttacctcggttgataccggtaatgta
ctggctgatatttgccaagatttagtccttggtgtgcaacctttttacagtgaagctcgg
gtattgcagctgaataaattgtgtcatcagggccaacacactgcgctgcaagcaaaacag
agtgattatgtgcttgccgataatattgcttttttacaacacagccatcgctttgatgaa
aaaagcggcattgggcaattagctaaagcggttaacagcaatgacaaacagctgctgcaa
gagattaaagcctttggttaccctgaactggcattttatgatttaaccaatgaatataaa
gcgatgatcattcgctgcgccgaggcttattcacagtatttagcgcttattaaacaaggt
gcaagccctcaagaggtgcatgatgcttttttacaatatcagctcttggccgcagtgcgc
gaaggcaattatggcgttaacaaactcaacagtaaaatcgaagcacaattagcacgcatg
ggacttatcagcccatcacatcggcactatgttggcatgccgctaatgatcagccagaac
gattatcagcttaaattatttaatggcgatattggcatcatcatgcccgatgatgacggc
cagctaaaagctgtgtttatgagtgaagggggcagtacccgcagtttttatccggctcgt
ttacccgcccatgaaaaagtctatgccatgacaatccacaaatcacaaggctctgaattt
ttgcatactgtaatgatcttaccgccaatgcagcaagcaaaaataggagtcaatcgccaa
ttagtgtacacaggcatcactcgagctaaaaaacgctttgatttaatcgctcagcctcaa
gtattacaactggcaatgaacaaaatgctcactcgcagctctgggttatatcagcgtttg
caacagagctaa
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