Pseudoalteromonas tunicata: PTUN_a2200
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Entry
PTUN_a2200 CDS
T05187
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTUN_a2200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptu03019
]
PTUN_a2200
Enzymes [BR:
ptu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTUN_a2200
Messenger RNA biogenesis [BR:
ptu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTUN_a2200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Fe-ADH
HEM4
AAA_19
UvrD-helicase
P-loop_SecA
Fimbrial_PilY2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATC94719
LinkDB
All DBs
Position
I:complement(2050418..2051659)
Genome browser
AA seq
413 aa
AA seq
DB search
MSFDALGLCDELVKAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMV
QLLSGGAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQL
ATGVDVLVATPGRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQ
TLMFSATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVDKTRKSEALIYLLKK
HQWRQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVLVAT
DIASRGIDVNQLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQAIER
LLGRTLAREVLPNFAPSEKKAVSKFDDDEYGNFEPDPEPRSGKGKSQKRKGKR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgacgctttaggcttatgcgatgagctggtaaaagcagtaacagagcagggc
tatacacagccaacaccgatacaagttgaagctattcctgtggtgcttcgtttgcgtgat
gtgatggcggtggcgaatactggcacgggtaaaacggctggttttaccttgcctatggta
caactcttatcgggtggggccattgcgcagccaaaatcggtgcgtgcgctagtgataaca
cctacacgtgaacttgcggcgcaagttgcacaaaatgtgcaagactatagtcgccatacg
aatattagttcggctgttgtgtttggtggggtaagaattgagccacaaatagcacagtta
gctacgggggtagatgtgctggtcgcgacacctgggcgtttagttgacctctataatcag
caagcaattaacttcaaccaacttgaattgttggtattagatgaggctgatcggatgttg
gacttaggctttattgatgatattcgacatattcaaaccttgctaccgagcgagcgtcaa
actctgatgttttcggcgacattctcagacgaaataaaatctctggccaaaggcatgcta
aacaatccgcagctgattgaggtaagcccagttaatagtacggtcgatacggttaaacaa
aagatataccctgttgataaaacacgcaaaagcgaagcgttaatttatttacttaaaaag
caccaatggcgccaagtcttggtctttagccgcacgaagcaaggcgccgatagtttggtt
actcaactgaacaatgcaggtattaatagtgcatcaatccatgccaatcgcacgcaacat
gcccgcacccatgcattaaatggctttaaatcaggtgaaattaaagtattagtagccact
gatattgcctcgcgaggcattgatgtaaaccaattaccgtgcgtgattaaccttgattta
ccttatgtagccgaagactacgtccatcgaattggccgcaccggccgcgctggcactgca
ggcttagcgatttccttgtttagtattgatgaatcgaatcaattgcaggcaattgaacgt
ttgctaggtcgcaccttagcacgcgaagtcctaccgaattttgcaccgagtgaaaagaaa
gccgtcagtaaattcgatgatgacgagtatggtaactttgaacccgatcccgaaccccga
agtggcaaaggcaaatctcaaaagcgaaagggtaagaggtaa
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