Pseudoalteromonas tunicata: PTUN_a3930
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Entry
PTUN_a3930 CDS
T05187
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTUN_a3930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptu03021
]
PTUN_a3930 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptu03400
]
PTUN_a3930 (rpoC)
Enzymes [BR:
ptu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTUN_a3930 (rpoC)
Transcription machinery [BR:
ptu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PTUN_a3930 (rpoC)
DNA repair and recombination proteins [BR:
ptu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PTUN_a3930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATC96184
LinkDB
All DBs
Position
I:complement(3645179..3649360)
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLNEEEYLDALEEHGDEFEAKM
GAEAVLDLLADLDLAQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLELRGMATTIKAAKKMVEREVPEVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNGLGEGAVFKDPKEAEKAYRTN
NAALHAKVKVRITETIKDVDGNVEDRISIYDTTVGRAILSLILPKGMPFELINRAMGKKQ
ISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGINDLVIPPVKAEIIKAAEDE
VSEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSRAMMENLSKDTVINAKGEEELQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEPLRERVL
GRVVAEDILKPGTNEVLVERNVMLNEKLCDLLEDNSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHLINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNPGTLKL
HNAKYVLNSDGKIVITSRSTEITIIDDHGREKERYKVPYGAVLSVQDGASVAGSDVVATW
DPHSHPIVVERVSKVTFSDIDDSNTEAQTDELTGLTRVVVKDLSKVNAKEPKLIIESEET
GLQETRLPSFTTIEVTDGATVNAGDVLARIPQEGSKTRDITGGLPRVADLFEARRPKEPA
ILAEITGAISFGKETKGKKRLVITPAEGEAYEEMIPKWRTLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTDVANYIVNEVQDVYRLQGVKINDKHIETIIRQMLRKCLIIDGGHSEFL
AGEQVEVARVNIANRRLETEGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQERIKRRKLRDNASNVEEQTVSAEEATQA
LTDALNADLSGNN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcagcaaaataagaccgaagagttcgatgcgatt
cgaattggtcttgcttcgccagatatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagacaatcaactaccgtacattcaagcctgagcgtgacggcttattctgtgcccgc
attttcggcccagtaaaagattacgaatgtttatgtggcaagtacaaacgccttaagcat
cgtggtgtgatttgtgaaaaatgtggtgttgaagttacgctaactaaagtgcgtcgtgac
cgtatgggtcatatcgaattggcaagcccagttgcgcatatttggttccttaaatcatta
ccgtctcgtattggtttaatgcttgatatgactttgcgtgatatcgaacgtgtactttat
ttcgaatcttttgttgttaccgaaccaggtatgacaacattagagcgtggtcaacttctt
aatgaagaagagtacctcgatgcacttgaagagcatggtgatgagtttgaagctaaaatg
ggtgcagaagcagtattagacttgctagctgacttagatttagcacaactaattgcagaa
atgcgtgaagagttaccaacaattaactctgaaaccaagcgtaagaaaattactaagcgt
ttaaaattaatggaatctttccaccaatcaggcaataaccctgagtggatgattatgact
gtacttccggtattaccaccagatttacgtccattagtaccattagacggcggccgtttc
gcgacttcagatctaaatgatctttaccgtcgtgtaattaaccgtaataaccgtcttaag
cgtttattagatttagcggcaccagacattatcgtacgtaacgaaaagcgtatgttacaa
gaagcggttgatgcgctacttgataatggtcgtcgtggtcgcgcgattacaggttcaaac
aaacgtcctcttaaatcacttgccgatatgattaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaaacgtgtagattattcaggtcgttcggtaatcactgtaggtccaaca
cttaaattgcatcagtgtggtcttcctaagaagatggcacttgagttatttaaaccattt
atctatggcaagttagaattacgtggcatggctacgacaattaaagccgctaagaaaatg
gttgagcgtgaagtacctgaagtatgggatatcttagatgaagttatccgtgaacatcca
gtacttcttaaccgtgctccaacacttcaccgtttgggtatccaagcgttcgaaccagta
ctaatcgaaggtaaagcaattcaccttcacccattagtatgtgcggcatataatgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacgttagaagcacagcttgaagct
cgcgctcttatgatgtcgaccaataacatcctatcacctgcaaatggtgagccgattatt
gttccgtcacaagacgttgttttaggtctatattacatgactcgcgactgtgtaaacggt
ttaggcgaaggcgctgtatttaaagatcctaaagaagctgaaaaagcatacagaacaaat
aatgctgctttacatgcaaaagtaaaagtacgtattacagaaacgattaaagatgtagat
ggtaatgttgaagatcgtatctcaatttatgatacgacagtcggccgtgctattttatcg
ttgattttaccaaaaggtatgccgtttgaattaatcaaccgcgccatgggtaaaaagcaa
atttctggcttattaaatgagtgttaccgtcgtctaggtcttaaagatacagttatcttt
gctgaccaagtgatgtataccggtttccattatgcgatgaagtcgggtgtatcaatcggt
attaacgatttggttatcccaccagtgaaagctgaaatcatcaaagcagcagaagatgaa
gtatcagaaatcaaccaacaattccaatcaggtcttgttacggctggtgaaaaatacaat
aaagtcatcgatatctggtcacgtgtaaatgaaaacttatcacgtgcgatgatggaaaac
ttatcgaaagatacagtgattaacgccaaaggcgaagaagagttacaagattcatttaac
tcagtattcatgatggccgactcaggcgcacgtggtagtgcggctcagatccgtcagcta
gccggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacaccaatcaca
gctaacttccgtgaaggtctaagtgtacttcagtacttcatctcaacgcatggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagctaactcgggttacttaactcgtcgttta
gttgacgttgcacaagatttagttatcaatgaagacgattgtggcactgaagatggctta
acaatgaaaccactaattgaaggtggtgatgttgttgaaccactacgcgagcgtgtatta
ggccgtgtggttgcagaagatattttaaaaccaggtactaatgaagtacttgttgagcgt
aacgtgatgcttaacgaaaaactgtgtgatctgttagaagataactcagttgacgaagta
cgtgtacgttcagttatcacatgtgataacgactttggtgtatgtgctaactgttacggt
cgtgaccttgcacgtggtcacttaattaacgcgggtgaatcagtaggtgttatcgcagct
caatcaatcggtgagccaggtacacagcttacgatgcgtacattccacatcggtggtgcg
gcatctcgagcgtctgcagaaaacagcgtacaagttaagaaccctggtacattaaagctt
cacaatgcgaaatacgtattaaattctgatggcaaaattgttatcacttcacgttctaca
gagatcactattattgatgatcacggtcgtgaaaaagagcgttataaagtaccttacggt
gccgtattatcagtacaagatggcgcatcagttgcgggtagcgatgttgtagcaacatgg
gatccgcatagtcacccaatcgtggttgagcgtgtttctaaagttacgttcagcgatatt
gatgactcaaatactgaagcacaaacggatgagctgacaggcttaactcgtgtggttgta
aaagacctatctaaagttaatgctaaagagcctaagttaatcatcgaaagtgaagaaaca
ggtttacaagaaactcgcttaccatcgtttacgacaattgaagtaactgatggtgcaacg
gtaaatgccggtgacgtgttagctcgtattccacaagaaggttcaaaaactcgcgatatc
acgggtggtctaccacgcgtagccgacctattcgaagcgcgtcgtccaaaagagccagct
attcttgcggaaattacaggtgccattagtttcggtaaagaaactaaaggtaaaaaacgc
ctagtaattacacctgctgaaggtgaagcatacgaagagatgatcccgaaatggcgtact
cttaacgtgtttgagggtgaacaagtgtctaaaggtgaggttatcgccgatggtcctgag
tcaccacacgacatcctacgtcttcgtggcgtaaccgatgttgcaaactacatcgttaac
gaagtacaagatgtttatcgtttacaaggcgtaaaaatcaatgataagcacatcgaaacg
attattcgtcagatgttacgtaaatgtttaatcattgatggtggtcatagtgagttcctt
gcgggtgaacaagttgaggttgcacgtgttaacattgcaaaccgccgcttagaaaccgaa
ggcaaaatcccagctaaatttgaaattcagctaatgggtatcactaaggcatcacttgca
acagaatctttcatttctgctgcatcattccaggaaacaactcgagtcctgactgacgct
gctgtaaatggtaagagcgatgagctacgaggcttgaaagaaaacgtaatcgtgggtcgt
ttgatcccagccggtaccggttttgcgtatcatcaagagcgtatcaagcgtcgtaaactg
cgtgataatgcttcaaatgttgaagagcaaacagttagtgcagaagaggcaactcaagca
ttaactgacgcattaaacgcagacctatctggtaacaactaa
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