Pseudoalteromonas tunicata: PTUN_b0477
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Entry
PTUN_b0477 CDS
T05187
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ptu
Pseudoalteromonas tunicata
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptu03400
]
PTUN_b0477 (sbcC)
DNA repair and recombination proteins [BR:
ptu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PTUN_b0477 (sbcC)
Archaeal homologous recombinant proteins
PTUN_b0477 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
SMC_N
AAA_21
ABC_tran
AAA_22
AAA
cobW
NTPase_1
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ATC96858
LinkDB
All DBs
Position
II:470930..474628
Genome browser
AA seq
1232 aa
AA seq
DB search
MRILSLRFKNINSLKGEWKIDFTQPPFANNGLFAITGPTGAGKTTLLDAICMALYHRTPR
LNAISKTSNELMTRGTAESLAEVEFEVKGQGYRAFWSQRRSRGSSEGNLQEAKVELAKIS
DGSILASQIKQKNQQIESITGLDFARFTKSMMLSQGQFAAFLNADPNERAELLEELTGTE
IYGLISEQVHIEFSQAKQALAELKAQAQGVELLSEEALATYKSQQSELTLTLQNAEAEQT
TLQTQLTWLKQYQQAQSVLTDLQLQVTKAEQALLEHQSQLTRLSNSEPAELLRPAYQVYQ
DHKNQADKLIAQLASLESVTAKQQLAVQLQQTQHDEAKIRLLELQQQQQQQDKLLNEEVI
PLDLELKSIVSDLTQNQTDLEQYIKQHNQLNTDTEALQAQQQNIVEKLAQCDKYLALHHA
DEQLASLLPRWQDQLQQVVANHELLADKSARINEQQLQLNKVVEQAKQAATELTIATQTH
SQNEQKQLSQQQALEHLLGQHTVASLQDSVQNMQQQQILSQQLPPILQRLKRCLAQKQQL
SISIEQATAQTAQCDQQLQQLRTTYKLQREQINLLEQLQRQEQQIADFTQARLQLQPDQA
CPLCGSCEHPLINEYRALDVNINQSKLNQAKQQLAEIEQQANQIKEQKAVAVAMHLQHAE
QYTQLITDIEQLQQNWHQINQSLALNLLWDDEVQLTEYLAQQQQALMSSKTLITQAQQFE
SALKQSLLNTQASFEKVKDIKHQHALLEQTITQQHAAITQQGTEIEKNQQLLHKQSTQLS
SELDKLGLVLPDLAEIETWYNHQHAKVAQWQQQQMQKKTLTDNQQKIQLQVTEKTTQLHQ
LTKLLDDYSSKIAQQMASQAQLQHKRQALFGEQKVETARSAMTQHVQQSQQLFDEQVNAL
NQLTQQWQSAQGEQKGLQQQLLQLQSDTLAHQTYWNEVLSNSVFADLDSFLAALLPQDQK
QQLQQLKQDLQTEQTKAVALLTQANNTFEQHLLDAQSPTWCDLDWQQLSEQLHHIQQKER
ELVEQTGQIKQALQDDQKRRLNQTHLFEKIALCQIEYDDLAYLHGLIGSQKGDKFRKFAQ
GLTLDHLVYLANKQLARLHGRYLLERKPSEALELQVLDTWQGDSVRDTKTLSGGESFLVS
LALALALSDLVSHKTSIDSLFLDEGFGTLDRETLDMALDALDNLHASGKTIGVISHIDAM
KERIAVQIEVKKQNGLGYSRLAPQYAFSGEEA
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatactgagtttacggtttaaaaatattaattcacttaaaggtgaatggaaaatt
gattttacccagcctccatttgctaataatggcttgtttgccatcacggggccaacaggt
gccggaaaaaccactttactcgatgctatttgcatggccttgtaccaccgtacaccaagg
cttaacgccatttcaaaaaccagtaatgagttgatgactcgcggtactgcggagtcttta
gcggaagtggagtttgaagtaaaaggccaagggtatcgtgcattttggagccaacgtcgc
tcacgaggcagtagcgaaggcaatttacaagaagcaaaagtggagcttgcaaaaatcagt
gatggcagcattttagcctcgcaaattaaacaaaaaaatcagcaaatagaatctattact
ggtctcgattttgcgcgttttactaaatctatgatgttgtctcaaggacaatttgcggcg
tttttaaatgctgatcctaacgagcgcgctgaattacttgaagaactgaccgggactgaa
atttatggtttgatttcagagcaagtacacatcgaattttcacaggcaaaacaagctctt
gctgaacttaaagcgcaggctcaaggggttgagcttctgagtgaagaagcattggcgaca
tataaaagccagcaaagtgagctcactcttaccttacaaaatgcagaagcagaacaaact
acgctgcaaactcagctcacttggctaaaacaatatcaacaagcccaatcggtattaacg
gacttgcaactgcaagtgacaaaagctgagcaggctttgcttgagcaccagagccaatta
acgcgtttgtcaaacagcgaaccagctgaattactccgacctgcctatcaagtgtaccaa
gaccataaaaatcaagctgataaacttatcgcgcaattggcgagtctagagagtgtaact
gccaagcagcaactggccgtgcagctacaacaaacgcagcatgatgaggcaaaaatacgt
ttattagagctacagcaacagcaacaacaacaagataaattactcaatgaagaagtgata
ccgcttgatcttgagctcaaaagtattgtgtctgatttaacacaaaaccagacagatctt
gagcaatatatcaagcaacataatcagctaaataccgatactgaggctcttcaagcccag
cagcaaaacatagtagaaaaactagcacaatgtgataaataccttgctttgcatcatgct
gatgagcaattggcaagtttactaccgcgctggcaagatcagttacaacaggtggttgct
aatcatgagttactcgcagataaatcggcccgaatcaatgaacagcaactgcaactgaat
aaagtagttgagcaagcaaagcaggccgccactgaactgacaatagcgacacagactcat
agccaaaacgagcaaaaacagctttcacagcaacaagcgcttgagcatttacttggtcag
catacggtagcttcgttgcaagacagtgtgcaaaatatgcagcaacagcaaattttatcg
cagcaattgccaccgatacttcagcgactcaaacgctgtttagcgcaaaagcaacagttg
agcattagtattgagcaggcaaccgctcaaactgcacagtgtgatcaacaactacaacag
ctgagaacaacctataagttgcagcgtgaacagattaatttattagaacaattacagcgt
caggaacagcaaattgccgactttactcaggcgcgtttacagttacagcctgatcaagcc
tgcccactatgcggctcatgtgaacatcctttaattaatgaatatcgagcacttgatgta
aatattaatcaaagtaaattaaatcaagccaaacagcagttggcagaaatagaacaacaa
gcaaatcaaatcaaagagcaaaaagccgtcgcggtggcaatgcatctgcaacacgctgag
caatacacgcaattaattactgacattgagcagttgcaacaaaactggcatcaaattaat
caatcattggcgcttaatctgttatgggatgatgaagttcagttaactgagtacctagcg
cagcaacaacaagcattaatgagctcaaaaacgctgatcactcaagcacagcaatttgaa
agtgcgcttaaacaaagcttattaaatacccaagcttcttttgagaaagtaaaagatata
aaacatcagcacgcgctactcgagcaaaccatcacccaacaacacgccgctattacacag
caaggtactgagattgaaaaaaaccaacaattattgcacaaacaatcgacacagctaagc
agtgagcttgataaattgggtttggttctgcctgatttagccgagattgaaacctggtat
aaccatcagcacgctaaagtagcacagtggcaacagcagcaaatgcagaaaaaaacgctg
acagacaatcagcaaaaaatacagttgcaagtaaccgaaaaaacaacccagttacaccag
ttaacaaagttgctcgatgattacagcagtaagatagcgcagcaaatggcgagccaagcg
caattacagcacaaaagacaagcattatttggtgagcaaaaagtagaaacggcacgcagt
gcaatgacgcaacatgtgcagcaaagtcaacaactttttgatgagcaagtcaacgcgctc
aatcaattaactcagcaatggcaaagcgcacaaggtgagcaaaaagggctacaacaacaa
cttttacagctgcaatcagatacattagcgcatcaaacctattggaatgaagtgctaagt
aacagcgtatttgctgatttagatagctttttagctgcattattaccacaagatcaaaaa
caacagctgcagcaattaaaacaggatttacagaccgagcaaaccaaagcggttgcgtta
ttaacgcaagctaacaatacctttgagcagcatttgctagatgcccagtcaccaacttgg
tgtgaccttgattggcaacagctgagcgagcaactacaccatattcagcaaaaagagcga
gagctggtggagcaaacagggcaaataaaacaagccttgcaggatgatcaaaagcgtcga
ttaaatcaaacccatttatttgaaaaaatagccctctgccaaattgaatatgatgattta
gcttatttacacggtttaattggatcccaaaaaggcgataaatttagaaagtttgcccaa
ggactgacacttgatcatctggtgtatttggccaataaacagttggcgcggttacatgga
cgttatttacttgaacgtaaaccatctgaagcgcttgaattacaagtacttgatacatgg
caaggcgatagcgtacgcgataccaaaaccctttctggtggcgaaagctttttagtcagc
ttggcattggcactggcgttgtcggatttagtgagccataaaactagtattgattcactg
tttttagatgaagggtttggcaccttagacagagaaacgctcgatatggcgttagacgcg
cttgataatttacatgccagtggcaaaactattggggtgatcagccacattgatgcaatg
aaagagcgaatagcagtgcaaattgaagtgaaaaaacaaaatggcttaggttatagccgc
ttagcacctcagtatgcattcagtggcgaggaagcgtaa
DBGET
integrated database retrieval system
