Pseudoalteromonas tunicata: PTUN_b0945
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Entry
PTUN_b0945 CDS
T05187
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTUN_b0945 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptu03019
]
PTUN_b0945 (deaD)
03009 Ribosome biogenesis [BR:
ptu03009
]
PTUN_b0945 (deaD)
Enzymes [BR:
ptu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTUN_b0945 (deaD)
Messenger RNA biogenesis [BR:
ptu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTUN_b0945 (deaD)
Ribosome biogenesis [BR:
ptu03009
]
Prokaryotic type
rRNA helicases
PTUN_b0945 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATC97260
LinkDB
All DBs
Position
II:complement(960284..962158)
Genome browser
AA seq
624 aa
AA seq
DB search
MTDTTQVRFDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAA
FGLPLLSRLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQL
RDLARGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPD
QTQMAFFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERI
AEVVDYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINIL
IATDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSR
LERITEGKIEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQMAEQSNTTPL
ELAAALLFDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDRNDRSERAPRERSERPR
RDNGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKP
AFEKLQQVLIRKHKISPSLVTAEQAAAADSQREERAPRSDRNDRAPREFQPRRRNERNND
RGDKKPVRSFKASGEGRSRPSFEG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacagatactacacaagtccgttttgaccaattaaaccttcttgcgcctgttcttcaa
gctataaacgaaatgggttatatcaccccaactccaatccaatcacaagctattccttca
ttattagcaggtaaagatgtattgggtgaagcgcaaactggtactggtaaaactgcggct
tttggtctgcctttgttatcacgtttagacgccgatttaaaacaaccacaaatgctggtt
gtgtgccctactcgtgaattagcaattcaagttgctgaagccctaactgattttgcaaaa
catatccgtggtttatttgttgctaccgtttacggtggccaatcatacacaccacaactt
cgtgatttagcccgtggcccacaaattgttgttggtacaccaggtcgaatgatggatcac
atcaaaaaaggtcgtttaaaattagacaatcttaaagcatgtgttcttgatgaagctgat
gaaatgttaaacatgggtttcttagaagacatcgagtggatcttgaatcaaattcctgat
caaactcaaatggcgttcttctctgcaactatgccagcaccaattaagaaaattactaat
caattcttaactgatcctatacacgtaaaaattgcggtacaaaaatcagataagccaaaa
ataactcaaaaatcatggactgtaggccgtataggcaaaacagttggtttagagcgtatt
gctgaagttgttgattacgatgcaatgattgttttcgttcgtacacgtaacgatacgtta
gtacttgctgagcacttagtaagcaagggctttaaagcttcagcattaaacggtgacatg
caacaacaagatcgcgagcgtattgttgagcaattaaaaaatggtcgcatcaatattcta
attgcaactgacgttgtagcccgtggattagatgtaccacgtattacacacgttattaac
tacgatttaccgcatgattctgagtcttatgttcaccgtattggtcgtacaggccgtgct
ggtcgtgaaggcgaagctattttgtttgcttcacaccgtgaagtgcgtagcttaagccgt
ttagagcgtattactgaaggtaagattgaagtatttgatatgcctacagctgagcaacta
ggtcaagcacgtattgaacgtactcaggctgctttagtaaaagcaatggaagtaaacgac
ttagcgaatttccaagcaatcgttagtcaaatggctgagcaaagcaatacgacaccactt
gagcttgctgctgcattattatttgatcgtcaaattgcacttcctttccaccctaaggcg
gatccggtagagcgtgagtttgctgctcgttcagatcgcggtggtcgtgaccgtaatgat
cgttttgaccgtaatgatcgtagcgagcgagctccacgcgaacgttcagagcgtccacgt
cgtgataacggtgagtttgatacatatcgctttaacgttggccgtacgcatggtgtgcgt
ccaggtgatatcgttggtgctgttgcaaatgaaatcaaaattgattcaaatgatatcggt
caaattcgtttatttgatggtttcacacatgttgatttacctaaaaacatgccaaaacca
gcatttgaaaaattacagcaagttttaatacgtaaacataagatttcaccaagtttggtt
actgctgaacaagctgctgcagctgattcacagcgtgaagaacgtgctccacgttcagat
cgtaatgatcgtgcaccacgtgagttccaacctcgtcgtcgtaacgagcgtaataatgac
cgtggcgataaaaagccagtgcgtagttttaaagctagcggtgaaggtcgtagccgtcca
agttttgaaggttaa
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