Paenibacillus tundrae: V6W81_08140
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Entry
V6W81_08140 CDS
T11276
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptun Paenibacillus tundrae
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptun03016
]
V6W81_08140
Enzymes [BR:
ptun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V6W81_08140
Transfer RNA biogenesis [BR:
ptun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V6W81_08140
Prokaryotic type
tRNA splicing ligases
V6W81_08140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PhetRS_B1
Motif
Other DBs
NCBI-ProteinID:
WWM62953
LinkDB
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Position
1825638..1826858
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AA seq
406 aa
AA seq
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MRVIDNIKVWGEPLENAVSQAVTCSQYGDVLGVALMADHHKGYSQPIGGVVAYRNMISPS
GVGYDIACGNKAVRTNLMWDDISHGIAKMMDEINRVVSFGVGRNNPTPIDHELFDDTSWE
LFDTIEPKLEQKLKTLARNQLGTVGSGNHFVDIFVEEATGKVWIANHFGSRGFGHKVASG
FLNLAAGREFSGKAPGESMDQPPTLFDLGSEMGDMYWKAMTLAGRYAYAGRDYVIEQVLD
ILGARSEYAVHNHHNFAWKEEHFGEETVVVRKGATPLSPGQLGFVGGSMGDISVIVEGIH
SDENTKSFRSTVHGAGRIMSRTQAAGKMNYKLRTRMGGEISEEQMQQAIRAYGVELRGAG
TDESPFVYKKLQDVLHAHASTLKVNHILRPVGVAMAGGNEFDPYKD
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtgattgataacattaaagtttggggggaaccgctggagaatgcagtgagtcag
gctgtgacttgctcgcagtatggagatgtgcttggtgtggcattaatggcagatcatcat
aaaggatattctcaacccattggtggtgtggtcgcctaccgtaatatgattagtccttca
ggtgtgggatacgatattgcctgtggtaacaaggcggtacgtacgaatctaatgtgggat
gatatttctcacgggattgcgaagatgatggatgagattaatcgggtcgtttcatttggg
gtgggacggaacaatccaacaccgattgaccacgaattgtttgatgatacgagctgggag
ctatttgacaccatcgagcccaagctagagcagaagttaaagacgctggcacgcaaccaa
ctcggaaccgtgggcagtggtaatcattttgttgatattttcgtagaagaagctacgggc
aaggtgtggattgccaatcacttcggaagtcgtggattcggtcataaagtagcgagtggc
ttcctcaacttggcagcagggcgtgagttcagtgggaaggcgcctggtgagtcgatggat
caaccccctacactgtttgatctaggtagcgaaatgggtgatatgtactggaaggcgatg
acccttgcgggtagatatgcatatgcaggacgtgactacgtcatcgaacaggtgctggat
atcctcggagctcgcagcgaatacgctgtccacaaccaccataactttgcatggaaagaa
gagcattttggcgaagaaactgttgtagtaagaaaaggtgcaacaccgttatccccagga
cagcttggttttgttgggggcagcatgggagatatttcggtcattgtcgaagggattcac
agtgatgaaaatacgaaatctttccgcagcactgtccacggagcgggacgtattatgagc
cgtacacaggctgctggcaaaatgaattacaagcttcgcacacgtatgggtggagagatt
agtgaagaacagatgcaacaagccatccgtgcgtatggcgtagaactgcgtggtgcagga
acagatgaaagtccgtttgtgtataagaagctgcaggatgtactccatgcccatgcaagt
accttgaaagtgaatcatattctgcgtcctgttggcgtggccatggccgggggcaatgag
tttgatccgtacaaggattaa
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