Paenibacillus tundrae: V6W81_10115
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Entry
V6W81_10115 CDS
T11276
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptun Paenibacillus tundrae
Pathway
ptun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W81_10115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptun03019
]
V6W81_10115
03009 Ribosome biogenesis [BR:
ptun03009
]
V6W81_10115
Enzymes [BR:
ptun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6W81_10115
Messenger RNA biogenesis [BR:
ptun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6W81_10115
Ribosome biogenesis [BR:
ptun03009
]
Prokaryotic type
rRNA helicases
V6W81_10115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WWM63325
LinkDB
All DBs
Position
2232704..2234278
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AA seq
524 aa
AA seq
DB search
MTNLNFADFNLEPLVLQAITELGFEEATPIQSKSIPIALQGRDLIGQAQTGTGKTAAFGI
PLISKISKTDDKIRALIMAPTRELAIQVAEEIEKLTRFKGLRSLPIYGGQDIVRQIRALK
RKPQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKQVPDDRQT
MLFSATMPPNIQKLAQQFLNNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLLDME
SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLVATD
VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAWSFVTPREIDHLHFIERV
TRHRIPRKPLPTMAEAVEGKQRLTAERLLEIVQSGELNEYKGIAIQMLEQYDSVQLLSAA
LKLLTGDKKDAQVDLTPEDPIRAKRRKPDVRSGGRKPSGYSGNRSGGGGGYNRDRNSSGG
GRGGYNRDRNSGGSGSREGGYNRDRKPRPSNNEGRRPAKDSSFE
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttaaatttcgcagatttcaatcttgaaccactggtgctacaagccatcact
gagctcgggtttgaggaagcaacaccgattcaatccaaatcgattcctatcgcacttcaa
ggcagagatttgatcggtcaagctcaaacaggtacaggtaaaacagcagcattcggtatt
ccattgattagcaaaatctccaagactgacgacaaaatccgcgccctcatcatggcacct
acacgcgagcttgcgatccaagttgccgaagagatcgaaaaactcactcgcttcaaagga
ttgcgctccctgccaatctacggaggacaagatattgttcgccaaatccgtgcactgaaa
agaaaaccacaaattatcattggtacacctggacgtcttctagaccacatcaaccgtaaa
acaatcaaacttgatgatgtacaaacggttgtattggatgaagcagatgaaatgctcgac
atgggtttcatggaggatattcaatcgatcctgaaacaagttccagatgaccgtcaaaca
atgctgttctcagcaacaatgcctcctaacattcaaaaattggctcaacaattccttaac
aaccctgagcatgtatccgtaattccgaaacaagttagtgcacctctgattgaccaagct
tacatcgaagtgcctgagcgtcaaaaattcgaggcattgagccgtttgctggatatggaa
tctccagaactggcaattgtattcggacgtacgaaacgtcgtgttgacgaattggctgaa
gcgttgcaaaaacgtggttattctgctgatggtctccatggtgacctatctcaaaaccaa
cgtgatacagtaatgcgtaagttccgtgacggcagcattgatgtactcgttgcaactgac
gttgctgctcgtggtctcgacgtatccggcgtaactcacgttgtgaactttgaccttcca
caagatcctgagagctatgttcaccgtatcggtcgtactggccgtgctggtaaagagggt
gctgcttggtcattcgttacaccacgtgagatcgatcacttgcactttattgagcgtgta
acgcgtcatcgtattccacgtaaaccattaccaacaatggcagaggctgtagaaggtaaa
caacgcttgacagctgagcgtttgcttgagatcgtacaatctggtgaactgaatgaatac
aaaggcattgctattcagatgcttgagcaatatgattcggttcaactcttgtcggctgct
ctgaagctcctgacaggtgacaaaaaagatgcacaagttgatctgactccagaagatcca
atccgtgctaaacgtcgtaaaccagatgttcgctccggtggacgtaaaccatcaggttac
agtggtaaccgcagtggcggtggcggcggctacaaccgtgatcgcaacagcagtggcggc
ggacgtggtggctacaaccgcgatcgtaacagcggtggaagtggaagcagagaaggtggt
tacaaccgtgaccgcaaacctcgtccaagcaacaatgaaggacgtcgtcctgccaaagat
tcatcttttgaataa
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