Paenibacillus tundrae: V6W81_11200
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Entry
V6W81_11200 CDS
T11276
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ptun Paenibacillus tundrae
Pathway
ptun02020
Two-component system
ptun02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6W81_11200
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6W81_11200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptun03021
]
V6W81_11200
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ptun02035
]
V6W81_11200
Transcription machinery [BR:
ptun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6W81_11200
Bacterial motility proteins [BR:
ptun02035
]
Flagellar system
Flagellar assembly proteins
Stator
V6W81_11200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
PhyR_sigma-like
Sigma70_ECF
HTH_23
7TMR-HDED
PCI
Motif
Other DBs
NCBI-ProteinID:
WWM63527
LinkDB
All DBs
Position
2484416..2485204
Genome browser
AA seq
262 aa
AA seq
DB search
MNERKASHLNHADLWEKWKEHGDLEAKKNLIEKYLHIVNYVSGRLAVGLPKNVPKDDLES
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKRIEDAYQQ
LEQSYLRSVSDEEMSAYLDVSTKDFQHMLQEVAVMSLCSLEDPIREEESETRLSLMVDEK
AKNPDYKVNEFYLKEALVQGLEKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLDKQKDLLLRKD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcgtaaagcttcacatttgaaccatgcagatctgtgggaaaagtggaaggaa
catggagatcttgaagccaagaaaaacttaatcgagaagtatcttcacattgtcaattat
gtatctggacgactggcagtaggattgcccaaaaacgttcccaaagatgacttggaaagc
aatggtgttatgggtttaatagatgcgttggaaaagttcgattatgaacgtgggctccag
tttgaaacatacgcttcttggcgtgttcgtggtgcgatactcgatggactaagacaaggg
gactgggttccacgttccgtgagggagaaagccaagcgcatcgaagacgcgtatcagcaa
ttggaacaatcgtatctaagatccgtaagtgatgaagaaatgagtgcgtacctggatgtg
tcaacaaaggatttccaacacatgcttcaggaggtggcggtaatgtcactttgctcactt
gaagaccctattcgagaagaagaatccgagacacgtctgtctttaatggttgacgaaaag
gccaaaaatcctgattataaggtcaatgagttttatttaaaagaagccttggtacagggt
cttgagaagctgacagtaaaagagcgcacggtggtttccctcttatattatgaagatctg
tctcttagcgagattgcagaggttatgtccttgtctccatcacgaatttctcagcttcat
tctaaggcgatcttaagactaagaggaacgttagataaacagaaggatctattactacgt
aaagattaa
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