Paenibacillus tundrae: V6W81_11330
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Entry
V6W81_11330 CDS
T11276
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ptun Paenibacillus tundrae
Pathway
ptun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W81_11330 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptun03019
]
V6W81_11330 (pnp)
03016 Transfer RNA biogenesis [BR:
ptun03016
]
V6W81_11330 (pnp)
Enzymes [BR:
ptun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V6W81_11330 (pnp)
Messenger RNA biogenesis [BR:
ptun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6W81_11330 (pnp)
Transfer RNA biogenesis [BR:
ptun03016
]
Prokaryotic type
tRNA degradation factors
V6W81_11330 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WWM63552
LinkDB
All DBs
Position
2511996..2514098
Genome browser
AA seq
700 aa
AA seq
DB search
MEKRVEMQLGGRTLVLETGRLAKQANAAVKVTYGDTVVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNIVMSVDQD
CEPQIAAMIGTSAALSISDVPFSGPIGGVKVGRINGEFIINPTIAQLEVSEIELVVAGTK
DAIMMVEAEANEVPEEIMLEAIMFGHDEIKNIVAVIEQLVEVAGKEKMAVKLHAVNADVN
SAVREFASARLVEAVKIAEKHARQDAIDVVNDETVAHFEEKYIETPELLKDVKEVLHDIV
KEEVRRLITHDKVRPDGRGLAEIRPIECDTSLLPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGISLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALAKVIPSETDF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILSDI
QGMEDHLGDMDFKVAGTPEGVTAIQMDIKIDGIDRQILSEALAQAKEGRMHILGKMTEVM
KTPREQLSQYAPKITTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSN
QEMNDKAKAIIEGIVREVLVGEIYVGKVKRVEKFGAFVEVLPNKEGLVHISQLSTERVAK
VEDVVAIGDSITVKVTEIDPQGRINLSRKAVLTAEAPAQS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcgtgttgaaatgcaacttggtggaagaacgcttgtgcttgaaacaggtcgt
ttggctaaacaagctaacgctgcggttaaggtgacgtacggagataccgttgtattgtgt
accgttacagcatccagcgaaccaaaagatttagactttttcccattgacggttaactat
gaagagagattgtacgctgtaggaaagattcctgggggattcatcaaacgtgaaggcaga
ccgagcgaaaaggcgatccttgccagccgtctgactgaccgtccgattcgtccgttgttc
ccagaaggcttccgtaatgatgttcaagttctcaacatcgttatgagtgttgatcaagac
tgtgaaccacaaattgctgcgatgatcggtacgtcggctgcattgagcatttctgatgtt
ccattcagcgggccaatcggtggtgtgaaagtgggacgaattaatggtgaattcatcatt
aacccaacaattgcacagcttgaagtaagtgagatcgagcttgtggtagctggaacgaaa
gatgccattatgatggttgaagctgaagctaacgaagtgccagaagaaatcatgctggaa
gcaatcatgtttggtcacgatgagatcaaaaacattgttgctgtgattgaacaactggta
gaagtagctggcaaagaaaaaatggctgtgaaactgcatgcagttaacgctgatgtaaat
agcgctgttcgtgaatttgcgagtgcacgtctcgttgaagcagttaaaattgcggaaaaa
catgctcgtcaggatgcaattgatgtagtgaatgacgaaacggttgctcacttcgaagag
aaatatatcgaaacacctgaactgctcaaagatgtaaaagaagtgcttcacgatattgta
aaagaagaagtacgtcgcctcattacacatgataaggttcgtccggatggtcgtggcctg
gctgagattcgtccaattgaatgtgacacatccctgttgccacgtacgcatggctctggt
ctgtttacgcgtggtcaaacacaagcccttagcatttgtacgcttggtgcgttaggtgat
gttcagatcttggatggtatcagtctggaagaaaccaaacgtttcatgcaccactacaac
ttcccaccgttcagcgtaggtgaagctcgtccattgcgtgcgcctggtcgtcgtgaaatc
ggacatggtgcattaggtgaacgtgccttggcgaaagtgattccttccgaaacagatttc
ccatacaccattcgtcttgtatctgaagtacttgaatccaacggttccacttcacaagca
agtatctgtgcgagcacgctcgcaatgatggatgctggtgtaccaattaaagctccagta
gccggtgttgctatgggtctgatcaaagacggcgatcatgtttcaatcttgagcgatatt
caaggtatggaagatcacctgggcgatatggactttaaagttgctggaacacctgaaggt
gtaactgcaattcaaatggacatcaaaattgatggtattgatcgtcaaattttgtctgaa
gcattggctcaagccaaagaaggtcgtatgcacatcttgggcaaaatgactgaggtaatg
aaaactccacgtgagcaattgtcacaatatgctcctaaaatcacgacgatgcacattaac
ccggacaaaatccgtgatgttatcggtgcaggtggtaaaattatcaataaaatcatcgag
gaaaccggtgttaaaattgatattgaacaagacggacgtgtctttatcgcttcctctaat
caggaaatgaacgataaagcaaaagcaatcatcgaagggatcgtgcgtgaagtactggtt
ggcgaaatttatgtcggcaaagtaaaacgtgtagaaaaattcggtgcatttgttgaagtt
cttccgaataaagaaggtctggtacacatctcacaattgtccacagaacgtgttgccaaa
gtggaagatgttgtagctattggtgattccattacggttaaagtaacggaaattgaccca
caaggtcgcatcaacctttcacgtaaagctgtattgacggcagaagctccggctcagtct
taa
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