Paenibacillus tundrae: V6W81_20485
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Entry
V6W81_20485 CDS
T11276
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptun Paenibacillus tundrae
Pathway
ptun02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6W81_20485 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptun03021
]
V6W81_20485 (rpoD)
Transcription machinery [BR:
ptun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6W81_20485 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
WWM59906
LinkDB
All DBs
Position
complement(4557201..4558340)
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AA seq
379 aa
AA seq
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MANDQHTELETELTLDQVKDQLIESGKKRASLNYKEIIEKLSPFEQDAEQMDEFYEQLSD
LGIDVVNENDEEVTLRPSEDSENNNREEGDEFHFDDDLSLPPGIKINDPVRMYLKEIGRV
PLLSADDEVELAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLI
KAVEKFDHKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE
LGREPTPEEIAAEMDLSVEKVREITKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPAD
AAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKRLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagagacagaattgacgctggatcaggttaaagat
caattgattgaatcaggtaagaaaagagcttcgctaaattacaaggaaattattgaaaaa
ctctccccgtttgagcaggatgcagagcaaatggatgagttctatgagcaattgagcgat
cttggtattgatgttgttaacgagaatgatgaagaggtaacacttcgtccgagcgaggat
tcggaaaacaacaacagagaagagggcgatgagttccactttgatgatgatctgagcttg
ccgccaggcatcaaaatcaatgaccctgttcgtatgtatctcaaagaaattggtcgtgtc
ccgctattgtccgcagacgatgaggtagaactggctaaacggattgagaatggggacgag
gaagccaagcgtcgtttggctgaagccaacttgcgactcgttgtcagcatagctaaacgt
tatgttggacgcggcatgttgttcctcgatctgattcaagaaggtaacatgggtctgatc
aaagcggttgagaagttcgaccacaaaaaaggttacaagttcagtacgtacgcgacatgg
tggattcgccaagcgattactcgtgccattgctgaccaagcacggacaattcgtatccct
gtacacatggtagaaacgattaataagctgatccgggtatcccgtcagctattacaagag
cttgggcgtgaaccaacaccagaagaaatcgcagctgaaatggatctgagtgttgagaaa
gtgcgtgaaattacgaagattgcacaagaaccggtttcccttgaaacaccaattggtgag
gaagatgattcccatctgggtgatttcatcgaggatcaggaggcattggctcctgctgat
gctgccgcgtatgaactgttgaaagagcaacttgaggatgttctggatacattgactgaa
cgggaagaaaatgtactacgtctacgcttcggtctcgatgatggacggacgagaacactc
gaagaagtcggcaaagtatttggcgttacgcgtgagcggattcgtcagatcgaagccaaa
gctcttcgtaagttgcgtcacccgagtcgcagtaaacgactcaaggatttcctcgaataa
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