Paenibacillus tundrae: V6W81_22195
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Entry
V6W81_22195 CDS
T11276
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptun Paenibacillus tundrae
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptun03016
]
V6W81_22195
Enzymes [BR:
ptun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V6W81_22195
Transfer RNA biogenesis [BR:
ptun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V6W81_22195
Prokaryotic type
tRNA splicing ligases
V6W81_22195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WWM60232
LinkDB
All DBs
Position
complement(4931788..4933251)
Genome browser
AA seq
487 aa
AA seq
DB search
MNTQPNLFADANDSLGGYRHEVKLPAGDLTVYAAQQLFSSLDYKVFEMANNNLQIPGISY
MSYTPDVHVGVGTCIGTTAVWDATNGYVSPSIVGSDIGCGMRVHMTNLHKDDLKDVKLRR
KLVKAIEKVLPMEANQRGHYSDIRLEHIVRKGLHGLPKKYIPDGYTPKKSTSITHVESSK
FTFDEEVLNLVPDMTWHRSHRQLGTLGGGNHFAEIQAIEIAEENRDIAEAWGLVDGQIVV
MIHSGSRTWGGHISQTSSAAIAKMMQRNGLGTSDPRLVFAPLEHAEGRHYVNMMYSALNY
AVVNRHLIAYSIREAFREVFGSKCEFRTLYDLMHNYAWEESHADQGSVFVHRKGATRALP
AHHPDNPKPYLGTGHPALIPGSMGTASYIMVGQPQGADNFYSICHGAGRIRSRNATKRLV
TLADFERALGVGTENEIVVNQPSLESIIDESPQAYKNVDEIIDSVTGAGLAQVVAKCKPL
AAVKGAK
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaatacacaacctaatttatttgcggatgccaatgattccttgggcggataccggcat
gaggtcaagttgccggcgggggatctaaccgtatatgccgcacaacagctattctcctct
ctggactataaagtgttcgagatggccaataacaatttgcagatccccggaatttcgtat
atgagctatacacctgacgtgcatgtcggtgtaggtacatgcattggaacaacagcagta
tgggatgcgaccaatgggtacgtatccccctcgattgtaggcagcgacattggctgtggc
atgagggtgcatatgaccaatttgcataaagatgatttgaaagatgtaaaattacgccga
aaactcgttaaagcgattgaaaaggtactgcctatggaagcgaaccagcgggggcattat
tctgacattcgattagagcacattgttcgcaaaggattacacggattaccgaagaaatat
ataccggacggctatacccctaagaagtctacgtctattacccatgtagaaagcagtaag
ttcacatttgatgaagaagtgctgaaccttgtcccagatatgacatggcatcgttcccac
cgtcagctaggtacgttgggcggaggaaatcattttgccgaaatacaagcgattgaaatc
gccgaggagaatcgtgatattgctgaagcatgggggttagttgacggacaaattgtagtg
atgatccattccggctcccgcacttggggagggcatataagccagaccagttcagcagca
atcgccaaaatgatgcaacgaaacgggctcggaacatctgacccaagactagtctttgct
ccactggagcatgccgaaggacgccattacgtgaatatgatgtattccgcattaaactac
gctgtggtgaatcgtcacttgattgcttactccattcgtgaagccttccgtgaagtgttt
ggatccaagtgcgaattccgtacactgtatgatctgatgcacaactatgcttgggaagaa
tcccatgcagatcaaggctcggtcttcgtacatcgcaaaggggcaacacgtgcattgcca
gcgcatcatcctgataatccaaagccatatctcgggactggacaccctgcgctgattcca
ggctctatgggcacagcttcgtatatcatggttggtcaaccgcaaggagcggataacttc
tattccatttgtcatggtgcgggacgaatccgttcacgtaatgcaacgaagcgtctagtc
actttggcggattttgaacgcgcgctgggtgtaggtacagagaatgagattgttgtcaat
cagccttcactagaatcgattattgatgaatcaccacaggcttataaaaatgttgatgaa
attattgatagtgttaccggcgcggggttggctcaagttgtcgccaaatgtaaaccgctt
gccgctgtgaagggagctaaataa
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