Paenibacillus tundrae: V6W81_25500
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Entry
V6W81_25500 CDS
T11276
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ptun Paenibacillus tundrae
Pathway
ptun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6W81_25500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptun03021
]
V6W81_25500
03400 DNA repair and recombination proteins [BR:
ptun03400
]
V6W81_25500
Enzymes [BR:
ptun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6W81_25500
Transcription machinery [BR:
ptun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6W81_25500
DNA repair and recombination proteins [BR:
ptun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6W81_25500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
PASTA
Motif
Other DBs
NCBI-ProteinID:
WWM60815
LinkDB
All DBs
Position
complement(5666405..5667349)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVDVNDDGTYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVSSVQIDG
VLHEFATVPGVMEDVTEIILNLKALSLKIHSDEEKVLEIDAEGEGAITAGDIRADSDVEI
LNPDLHIATLGPGSRLHMRIFANRGRGYVQADRNKRDDQPIGVIPVDSIFTPISRVNYAV
ENTRVGQVTNYDKLTLEVWTDGSIRPEEAVSLGAKILTEHLMLFVGLTDEAKDAEIMVEK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELTTKTEEDMMKVRNLGRKSLEEVQ
EKLEELGLGLRTEE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtgattgaaatcgaaaagccgaaaattgagacggtagacgtcaacgatgatggcacctat
gggaaattcgtagtagaaccgctggaacgtggatacggtacgacgcttggaaactcgctt
cgccgaatcttgctttcctcactgccgggtgcggcagtgtcttcggttcaaatcgatggc
gttctgcatgaatttgctacagttcctggcgtaatggaagatgtaacggagattattctt
aacctgaaagctttgtcgcttaagattcattccgacgaggagaaagttctcgagattgat
gctgaaggcgaaggagcaattacggcaggggatatccgtgctgactccgatgtggaaatc
cttaatccggatcttcacattgctacgctcggaccaggttcgagacttcacatgcgtatt
tttgccaatcgcggtcgcggctacgtccaggcagatcggaataaacgcgatgaccagccg
atcggcgtcatccctgtcgattccatcttcaccccgatcagccgcgtaaactacgctgtg
gaaaatacgcgtgtcggccaagtgaccaactatgacaagctcacgttggaagtttggact
gacggaagtattcgtcctgaagaggctgtaagcctcggcgctaaaattttgaccgagcac
ttgatgctcttcgtgggtcttacagacgaagcgaaagatgcagagatcatggtcgaaaaa
gaagaagacaaaaaagaaaaagtactcgaaatgacgatcgaagagctggatctctctgtt
cgttcctacaactgcctcaaacgtgctggtattaataccgtacaagagctgactacgaaa
acagaagaagacatgatgaaagtccgtaacctcggacgtaagtctttggaagaagttcaa
gagaagcttgaggagcttggtttgggactccgtacagaagaatag
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