Paenibacillus tundrae: V6W81_27820
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Entry
V6W81_27820 CDS
T11276
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ptun Paenibacillus tundrae
Pathway
ptun00040
Pentose and glucuronate interconversions
ptun01100
Metabolic pathways
ptun02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ptun00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
V6W81_27820
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
V6W81_27820
Enzymes [BR:
ptun01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
V6W81_27820
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
WWM61254
LinkDB
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Position
complement(6228220..6229647)
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AA seq
475 aa
AA seq
DB search
MRTKLRSWCSTALAVTLGLTLISGPASVQAAGNADYNLTGFSQGNTGGGIISDSNTSTYK
KVYNATDLALALKKNSGVKVVEIMNDLNLGWNEIPSAAQTSPFAKHNDALTHPVLKQTGV
SKLTIDGFNGLTIFSANGSKIKHAAISVKRSSNVIIRNLEFDELWEWDESTKGDYDKNDW
DYITLEESSGVWIDHCTFNKAYDGLVDSKKGTSGVTISWSTFKGDDGSANSWVTQQINEL
EANKASYPMYNYLRSSAVGLSKADIIAISGPQKKGHLVGSTSLESANANLSMTLHHNLYK
DIQDRMPRLRGGNAHAYNIVMDATAARAAKAKITSAMATAIASKGYKFDIISNGAISTES
GAVLVEKSVIKDVQFPVRNNQTNPADATYTGKIRVMDTIYALDGSLFRGSSDTSGSPLAP
IPAVVKTFSWNGFATLPYSYQVDDPSTLNARLTASNGAGAGKLTWSKDNWLKTSY
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagaacaaaattaagaagctggtgcagtacagccttggctgtaacgttggggctcacg
ctaatatcgggtcctgcgagtgtgcaggcagcagggaatgcagattacaatctcacggga
ttctcccaaggtaacacgggcggtggcatcatcagtgattcgaatacgtccacgtataag
aaggtatacaatgcgactgaccttgcactggcgttgaagaagaactccggcgtcaaagtc
gtggagatcatgaatgatctgaatctggggtggaacgaaattccgagtgcagcgcagaca
tcaccttttgccaaacacaatgatgccttaacgcatcctgtattgaaacagaccggcgta
agtaagcttacgattgacggttttaacgggctcactattttctctgccaacggctccaaa
atcaaacatgctgcgattagtgtgaaacgaagctccaacgttattatccgtaatctcgaa
tttgatgagctctgggaatgggatgagtccaccaagggtgactacgacaagaacgactgg
gattacatcaccctggaggagagtagcggtgtatggattgatcactgtacatttaacaaa
gcctatgacggactcgttgattcaaaaaaaggaaccagcggcgtgactatctcctggtct
accttcaagggcgatgacggcagcgcgaacagttgggttacgcagcagatcaatgagctg
gaagccaataaagcttcctatccgatgtacaattacctgcgcagcagtgcagtgggtctc
agtaaagcagacattatcgccatctctggcccacagaaaaaggggcatctcgttggttca
acgagtcttgaatcggcgaatgctaatctgtctatgacgctgcatcataatctgtacaag
gatattcaggatcggatgccgcgtctgcgcggaggcaatgcccatgcctataacattgtg
atggatgctacagcagcgcgggctgccaaagccaaaattacgtctgcgatggcaactgcc
attgcttccaaaggatataaatttgatatcatcagcaatggtgccatctcgactgaaagc
ggagcggttctcgttgagaagtcggtcatcaaggatgtgcagttcccggttcgcaacaat
cagaccaatccagcagatgcaacatatacgggcaaaatccgtgtaatggatacgatatac
gccctggatggaagcttgttccgcggcagtagtgatacttctggcagtccactcgcacca
attccagctgtagtgaagacgttctcttggaacggcttcgcgactctcccatacagttat
caggtggatgatccttccacattgaatgcacgtctcacggcctccaacggcgcaggtgca
ggcaagctcacctggtccaaggataattggctgaagacaagctattaa
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