Pseudomonas trivialis: AA957_02895
Help
Entry
AA957_02895 CDS
T04006
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptv
Pseudomonas trivialis
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptv03016
]
AA957_02895
Enzymes [BR:
ptv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AA957_02895
Transfer RNA biogenesis [BR:
ptv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AA957_02895
Prokaryotic type
tRNA splicing ligases
AA957_02895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
Motif
Other DBs
NCBI-ProteinID:
AKS05100
UniProt:
A0A0H5A6D8
LinkDB
All DBs
Position
complement(702867..704093)
Genome browser
AA seq
408 aa
AA seq
DB search
MQEKTYQLLEVADGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTTLTASDLPDNLHGLRCAIEAAVPHGRTRSRK
GRDKGAWEDVPAQADQAWTALHPRFKAITDKYPQLERSNNRQHLGTLGGGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQLAQADMQQHLANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNRELMMLAVVQATRQVISKPFEVALEAVNCHHNYVQKERHFGEDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDVDVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagaaaacctaccaactgctggaagtcgccgacggcaagccgatcaaactctgg
acccagggcgtgccggtcgagcccgaggcccgccagcaactgatgaataccgccaagatg
ccgtttatcttcaagcaccttgcggtgatgccggatgtgcacttgggcaagggttcgacc
atcggcagcgtgatccccaccgtgggcgcaatcatcccggcagcggtgggcgtggatatt
ggctgcggcatgatcgccgcgcgtaccacgctgaccgccagcgacttgcccgacaacctc
cacggtctgcgttgtgccatcgaggccgctgtgccccatggccgtactcgcagccgtaaa
ggccgcgacaagggtgcatgggaagacgtgccggcccaggccgatcaggcatggacggcg
ttgcacccgcgcttcaaggcgatcaccgacaagtacccgcaactggagcgcagcaacaac
cgccagcacctcggcaccctgggcggcggtaaccacttcgtcgaggtgtgcctggatgaa
gccaaccgtgtctggttcatgttgcacagcggttcgcgtggcgtgggtaacgccatcggc
aacctgtttatccagctggcccaggcggatatgcagcaacacctggcgaacttgccggac
cgtgacctggcgtatttcgaagagggcagccagcacttcgacgactacgtggaagcggtg
ggctgggctcaggatttcgcccggcagaaccgtgagttgatgatgctcgcggtggtccag
gccacacgccaggtgatcagcaagccgtttgaagtggcgctggaagcggtgaactgtcat
cacaactacgtgcagaaagagcggcactttggcgaagacatcctggtgacgcgcaagggc
gcggtgtcggcgaagaagggcgagctggggattattccgggctccatgggcgccaaaagc
ttcattgtgcgtggcctgggcaacgaagagtcgttctgctcgtgcagccacggcgccggc
cgcaccatgagccgtaccaaggcgaagaacaccttcaccctggccgaccagatccgcgcg
acggcccatgtggagtgccgcaaggacgtcgatgtgatcgatgaaattccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgctgcacaccttg
cgtcaagtggtgtgcgtcaaaggataa
DBGET
integrated database retrieval system
