Pseudomonas trivialis: AA957_16430
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Entry
AA957_16430 CDS
T04006
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptv
Pseudomonas trivialis
Pathway
ptv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA957_16430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptv03019
]
AA957_16430
Enzymes [BR:
ptv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA957_16430
Messenger RNA biogenesis [BR:
ptv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AA957_16430
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKS07641
UniProt:
A0A0H5A9I4
LinkDB
All DBs
Position
complement(3655461..3657350)
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDD
IDNFGNRADYVPQAKPAQGRGRRPSAPAQGAAAGTGAPRGGQPQGGRQNGPRNSSGGTTG
TPPAKRSGPRNGAPRDGQARREDSRSNNRRPARDDQPLSEPAVQNPRGGPAPKIIHKESK
ADRFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactcgccgcccaagtgcacgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagtgcctgcatcttcggcggcgttggcatgaac
ccacaggttcaggccatgtcccgtggtgtggacgtgctggtggcatgcccaggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgttggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcaccgcc
ctggctggcaagttgctgcacaacccggaacgcatcgaagtcacgccaccgaacaccacg
gtcgagcgtatcgagcaacgcgtattccgcctggccgccagccacaagcgttcgctgctc
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggtctcaccgccgttgccatccac
ggcaacaagagccagaacgcacgcaccaaagccctggccgacttcaaggccggtagcgta
cgcatcctggtcgccaccgacatcgccgctcgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccaaacgtcgacgaagactacgtgcaccgtatcggccgtacc
ggccgcgccggtcgttcgggtgaagccatttccctggttgcaccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gattccagcgccgtggaggctgagaagcctgaagcgcgcgagcgcccagacgtgcgtaac
ccacgcaacccacgcggtccgaagggcgatggccctaacggcggtggcggtggcggtggt
cgtcgcgacaagggcaaagacaaaggcggcaaggaaaaagcgccaaccaacggccgtggc
gagcgcccagcccgcgagcaaaagccccgtgaaggtactccggcccgcgaacagcgccag
ccgagccagccgccacgtgccgctgccgaccgcgccccggacgagttccttgacgacgat
atcgataacttcggtaaccgcgccgactacgtacctcaggcaaaacccgcccaaggtcgt
ggccgtcgcccaagtgctccggcacagggtgcggctgcaggtaccggtgctccacgtggc
ggccagcctcagggcggtcgtcagaacggcccgcgtaacagcagcggcggtaccaccggt
acgccacctgccaagcgcagcggcccgcgcaatggcgcaccgcgtgacggtcaagcccgt
cgcgaagactcgcgcagcaacaaccgccgcccggcccgtgacgaccagcctctgtccgag
ccagccgtgcagaacccgcgcggtggcccggcgccgaagatcatccacaaggagtcgaaa
gcggatcgcttcccgacacctgaacagttggatcaactgccaggccgccctcgtggtgaa
aaaccagcgttgctgactcgcaaccgctga
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