Pseudomonas trivialis: AA957_22115
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Entry
AA957_22115 CDS
T04006
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptv
Pseudomonas trivialis
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptv03019
]
AA957_22115
Enzymes [BR:
ptv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AA957_22115
Messenger RNA biogenesis [BR:
ptv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AA957_22115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
ResIII
ABC_tran
NleF_casp_inhib
SLFN-g3_helicase
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AKS08709
UniProt:
A0A0H5AC71
LinkDB
All DBs
Position
4887138..4891049
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPTIDQLLKTLDHAMLADRNRLRRQLLELRKKPDEEKLAQWVARMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKAALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLFS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTINKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEASQQVENHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEENGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIEALVEDILLASLDTCVLEGEASLPRDGAGLAAL
AERKRGGWTEHAERLARLTLEVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSNLVYSGF
VRETPAQWFKELPRYLKAIELRLEKLPGQVQKDRVWSSELGGLWTQYENRLKKHAQEGKR
DPQLELYRWWLEEYRVSLFGQQLGTKVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcgccgactatcgaccaactgctcaaaaccctcgatcacgccatgctt
gccgaccgcaaccgcttgcggcggcagttgcttgagctgcgcaagaaacccgacgaggaa
aagctggcgcagtgggttgcgcggatgcaggcgtcctgtgcccaggtcacggcgcggcgt
gccagcctgccggtgattcgctacgacgacagcctgccgattgccgccaagcgcgatgaa
atcaaggcggcgctgaacaagcatcaggtgctgatcattgccggtgagaccggttcgggt
aagaccacccagctgccgaagatctgcctggaaatcggtcgcggccaattcggcctgatc
ggccacacccagccacgccggatcgctgcacgcagcgtcgccagccgggtggccgaagaa
ctggccacgccgctcggcgcgctggtcggctatcaagttcggttcgaagaccagagcgat
tccaacaccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctggaacgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctcaac
atcgacttcctgctgggctatttgaaaaccctgctgccgcgtcgcccggacctgaaggtg
atcatcacctcggccaccatcgacctggagcgtttttccaagcactttgacgatgcgccg
attgtcgaggtgtcgggccgcaccttcccggtggacacgtggtatcgccctttgaccctg
gagcaggacgaggagggcaaccgcgtcgaagacgacttgacggttgaccaggcgatcctc
gccaccctcgatgaaatcgccgcttatgagcgcagcgaacggcgcagccccggcgacgtg
ctggtgtttctgccgggtgagcgcgagattcgcgacgccgctgacatgttgcgcaaagcc
cagctcaagcacaccgaaatcctgccgctttacgcacgcctctcgccggccgaacagcag
cgcattttccagtcccatccgggccggcgcgtagtgctggcgaccaacgtcgcggaaacc
tcgctgaccgtgccgggcatccgttatgtgatcgacagtggcaccgcgcgtatcagccgc
tacagctatcgcgccaaggtgcagcgcctgccgatcgaggcgatttcccaggccagcgcc
aaccagcgtaaaggccgttgcggccgggttgagccggggatctgtatccgcttgttcagc
gaagaagactttatcggccgcccggaatttaccgacccggaaatcctgcgcaccaacctt
gccgccgtgatcctgcagatgctgcacctgcgccttggcgaaatcaccgatttcccgttt
atcgagccgccggatggcaaggccatcagcgacggtttcaacctgctgcaagagctctcg
gcggtcgaccgcaacagccagctcacaccgctgggtcgccaactggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgctggaagcagccaaactcggcagcttgcaggaagtg
ctgatcgtcgccagtgccatgtcgatccaggacccgcgcgagcgtccgcccgaacgtcag
caagccgccgaccaggcccacgcgcagtggaaagacccggattcggacttcgccgggctg
gtcaatctgtggcgtggttttgaagaacagcgccaggcactgaccgccagcccgctgcgc
aattggtgccgcaagaacttcctcaactacctgcgcctgcgtgagtggcgcgattcccac
cggcagttgagcctgatctgccgcgatatgcagttgaccatcaacaaagagccggcggat
tttccaaaactgcacaaggcggtgttgtccggcttgctcagccagatcggtcagaaaacc
gaagacggcgattacctcggcgcacgccagcgacgcttctggattcacccgtcgtcgggc
atcggcaagaagcgcccgcaatggctgatgaccgccgaactggtggaaaccaccaagctg
tatgcgcgcatggtcgccaagatcgacgccgactggatcgagccgctggccgggcacttg
atcaagaaaaaccacttcgaaccgcattgggagaagaagcgcgggcaagtcgtggccttt
gagcagatcacgctgttcgggctgattgtggtcgggcggcggccggtgcattacgggccg
attgacccggtggtgtcgcgcgagctgtttatccgcgaaggcctggtgcgtggcgagatt
caatcgcgggccaagtgcctgacggccaatcagcaattgctggaacagcttgacgagttg
gaggctaaggcgcgccgccgcgacatcctggcggatgaagaaacgctgtacgctttttac
gatgcgcgcctgccggcagagatccaccagaccgcgaccttcgacagttggtacaaggtc
aacagccagaaagacccacaactgctgatcatgcgcgaggaagacgtgctggcccgcgag
gccagtgaagtcaccgccgcgcattatccggacaccctgcacctgggcgacctcgaactg
gcgttgagttaccacttcgaacccaatcacccgcgcgacggcgtgaccctgcgcgtaccg
gcaccgctgttgccggctttgccgccggagcgtctggaatggctggtaccgggggtgatc
gaggccaagtgcatcgccctggtgcgcaacctgcccaaggcgctgcgcaaaaactttgtg
ccggtgccggacttcgtcaaggccgccttgcaacgcatcgaattcggccagggctcgctg
cctcaggcgctgggccgcgaattactgcgcatgactggcgcgcgggtcagcgatgaagcc
tgggctgaagcgtcgcagcaggtagaaaatcacctgaagatgaacctggaagtggtcgac
ggccagggcaagttccttggcgaaggccgcgacctggctgaactgacggcgcgctttgcc
gaggccagccaggctgcattggccgtgccgcaaaccgcgaaaagccagcagccggtggag
gccaaggtgtttgcggcggtggcggaaaagacccaacagaagatcgccggcctatcaatg
acggtgtatccggcgctggtggaagaaaacggcacggtcaaggaggggcgtttctcgacc
gctgccgaggctgaattccagcatcgccgcgcgttgcagcgtctgctgatgcagcaactg
gcggaaccggccaagttcttgcgcggcaaattgccgggcctcaccgaactggggctgatg
taccgcgaattggggcgtatcgaagcgctggtggaagacatcctgctggccagcctcgac
acctgcgtgcttgaaggcgaagccagcctgccgcgcgacggtgcaggtttggccgccttg
gccgagcgcaagcgcggcggctggaccgaacacgccgagcgattggcgcgcttgaccctg
gaggtgctgaaactctggcatggcttgcagaagcgcttcaaaggcaagatcgacctggcc
caggccgtggccctgaacgacatcaaacagcagttgagcaacctggtgtactcaggtttc
gtgcgggaaaccccggcgcagtggttcaaggaattaccgcgttacctcaaggccatcgaa
ttgcgcctggagaaactgccaggccaggtgcaaaaagatcgggtctggagcagcgagctg
ggcggcctgtggacgcagtacgagaaccgtctgaaaaagcatgcccaggaaggcaagcgc
gatccccagttggagctctatcgctggtggttggaggagtatcgggtgtcgctgtttggc
cagcaattgggcaccaaagtgccgatttccgataagcgtctaagcaagcaatggagcctg
gtcgaagcctga
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