Pseudomonas trivialis: AA957_28910
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Entry
AA957_28910 CDS
T04006
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ptv
Pseudomonas trivialis
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptv03032
]
AA957_28910
03400 DNA repair and recombination proteins [BR:
ptv03400
]
AA957_28910
Enzymes [BR:
ptv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AA957_28910
DNA replication proteins [BR:
ptv03032
]
Prokaryotic type
DNA Topoisomerases
AA957_28910
DNA repair and recombination proteins [BR:
ptv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AA957_28910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PB1
Motif
Other DBs
NCBI-ProteinID:
AKS09964
UniProt:
A0A0H5AFG4
LinkDB
All DBs
Position
complement(6338472..6339509)
Genome browser
AA seq
345 aa
AA seq
DB search
MSDSALPRDLHYVDDTQPGIRRKTLRGKFQYFDPKGERIRDADEIKRLNALAVPPAYTDV
WICADPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLQQFGNALPKLRKQLEAQIA
EPGFTREKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRTRHVDVKGSEIKFQFRGK
SGVEHQISVKDRRLATVVKRCLELPGQNLFQYLDEDGERRTVSSQDVNDYLHSLTGADFT
AKDYRTWAGTAMALAVLRELEWQPESDAKRHVVAMVKDVAKQLGNTPAVCRKCYIHPAVL
EHFSLGELSKLPKPRLRKGLKAEEAALAMFLEQLAADLPKNAKAG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactctgcgctaccccgcgacctgcattatgttgatgacacccagcccggcatc
cgccgcaagacgctgcggggcaagttccagtacttcgaccccaagggtgagcgcatccgc
gatgccgacgagatcaagcgcctgaacgccctggccgtaccgccggcctacaccgatgtg
tggatctgcgccgacccgcgcggccatctgcaagccaccggccgcgacgcgcgtgggcgc
aaacagtaccgctatcacccgcgctggcgtgaggtgcgtgacagcgacaagtactctcgg
ctgcagcagttcggcaacgccctgccaaaactgcgcaaacagctggaagcacaaatcgcc
gaacctggcttcacccgcgaaaaagtattggccaccgtggtgatgctgctggacgctacg
ctcatccgcgtcggcaatacccaatatgcgcgggacaataaatcctacgggctgaccacg
ctgcgtacccgccatgtggatgtgaaaggtagcgagatcaagttccagtttcgcggcaag
agcggcgtcgagcaccagatcagcgtgaaagatcggcgcctggcgacggtggtcaagcgc
tgcctggaattgcccgggcagaacttgttccagtacctggacgaagacggcgaacggcgc
accgtgagctcccaggacgtgaatgactacttgcacagcctcaccggtgcggacttcacc
gccaaggattaccgcacctgggccggcaccgccatggcgttggcggtattgcgggaattg
gagtggcagcccgaatccgatgccaaacggcacgtggtggcaatggtcaaggacgtcgcc
aagcagttgggcaacaccccggcggtatgccgcaagtgttacatccaccctgcggtgctg
gagcatttcagcctcggcgaactctccaagctgcccaaaccgcggctgcgtaaagggctc
aaggccgaagaagcggcattggcgatgttccttgagcaactggcagcggacttgccgaaa
aacgccaaggcgggttag
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