Pseudomonas tohonis: TUM18999_05640
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Entry
TUM18999_05640 CDS
T07887
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM18999_05640 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptw03019
]
TUM18999_05640 (rhlE)
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TUM18999_05640 (rhlE)
Messenger RNA biogenesis [BR:
ptw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM18999_05640 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_25
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BCG22373
UniProt:
A0A6J4DXT5
LinkDB
All DBs
Position
complement(600373..602247)
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AA seq
624 aa
AA seq
DB search
MSFASLGLSEALVGAVEAAGYNQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPNGHPDKSHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLASACIFGGVGMN
PQVQAVAKGVDVLVACPGRLLDLVGQGSIDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRALL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKANSV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKAIERLTKQRIPDGDMQGFDASTVEAERPDVRPPQPARQPRADRPKREGATPPAADGEG
KPRKSRNRRGKGKGKEGENAQPAAGNNNQPQQARPARPPQPPRDRDPEEFLDDDVDNFGN
RADYVSPYPDKTQSRNRRGGQGQGQGQGQNQGRSQGQGAGARGQGAGQGKARSGGGGSGQ
GAGNGQRRNGQGQGRGNGGGQGRRDEQRSSRSREEPAVQEPRKPQPKIIHKESKGDRFPT
AEQLDQLSNSRPRGEKPALLTRNR
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctttagtcggtgctgtggaagcagccggc
tacaaccagcccactccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagactggcactggcaagaccggcggcttcgcccttccggttctc
gagcgcctcttccccaacggccacccggacaagtcgcaccgccatggcccgcgccaggcc
cgcgtactggtcctgaccccgacgcgcgaactcgccgcccaggtccacgacagcttcaag
gtctatgcacgtgacctgccgctggccagcgcctgcatcttcggcggtgtcggcatgaac
ccgcaggtccaggccgtggccaagggcgtcgacgtcctcgtggcctgccccgggcgcctg
ctggacctcgtgggccagggcagcatcgacctctcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggtcctcgcgcgc
ctcccggccaagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctcgccggcaagctcctgcacaaccccgagcgcatcgaagtgaccccgccgaacaccacg
gtcgagcgcatcgagcagcgggtgttccgcctcccggccaaccacaagcgtgccttgctg
gcccacctggtcacggtcggcgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggtgccaaccgcctggccgagtacctcgacaagcatggcctgccggctgccgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaacagcgtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaactacgagctgcccaacgtcgaggaagactacgtgcaccgcatcggccgcacc
ggtcgtgccggccgtagcggcgaggccatttccctggtcgcccccgacgaagagaagctg
ctcaaggccatcgagcgcctgaccaagcagcgcatccccgatggcgacatgcagggcttc
gacgcctccaccgtggaagccgaacgccccgacgtgcgcccgccgcaaccggcccgccag
ccgcgtgccgaccgtccgaagcgcgaaggggccaccccgcccgccgccgacggcgaaggc
aagccgcgcaagagccgcaaccgccgcggcaagggcaaaggcaaggaaggcgagaacgcc
caaccggcagccggcaacaacaaccagccccagcaggctcgtccggcacgcccgccgcag
cccccgcgtgatcgcgacccggaagagttcctcgacgacgacgtggacaacttcggcaac
cgtgccgactacgtcagcccctacccggacaagacccagagccgcaaccgccgtggcggc
caggggcagggccaggggcagggccagaaccagggcagaagccagggccagggcgccggt
gcgcgtggccagggcgccggccagggcaaggcccgcagcggtggcggtggttccggccag
ggcgccggcaacggccagcgccgcaatggccagggccaaggccgtggtaacggtggcggc
cagggtcgtcgcgacgagcagcgcagctcccgctcccgtgaagaacccgccgtgcaggag
ccgcgcaagccgcagccgaagatcatccacaaggagtccaagggtgatcgcttccccacc
gcggagcagttggaccagctgtccaacagccgcccccgtggcgagaagccggcgctgctg
acccgcaaccgctaa
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